RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 GRAMD1CQ8IYS0 662 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 SYT2Q8N9I0 419 aaPredicted RBP15.81■□□□□ 0.12
SKA1-202ENST00000398452 AFG1LQ8WV93 481 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 BLZF1Q9H2G9 400 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 BCAS3Q9H6U6 928 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 ANKEF1Q9NU02 776 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 BLOC1S4Q9NUP1 217 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 KCND2Q9NZV8 630 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 SEPT9Q9UHD8 586 aaPredicted RBP15.81■□□□□ 0.12
SKA1-202ENST00000398452 DACH1Q9UI36 760 aa15.81■□□□□ 0.12
SKA1-202ENST00000398452 DBR1Q9UK59 544 aaKnown RBP15.81■□□□□ 0.12
SKA1-202ENST00000398452 DOCK3Q8IZD9 2030 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 MCM3APO60318 1980 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 EMSYQ7Z589 1322 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 SEPT4O43236 478 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 PPFIA4O75335 1185 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 TBCAO75347 108 aaKnown RBP15.8■□□□□ 0.12
SKA1-202ENST00000398452 CYBAP13498 195 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 IDEP14735 1019 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 ELNP15502 786 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 PRKCEQ02156 737 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 STX1AQ16623 288 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 LRSAM1Q6UWE0 723 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 PLPPR4Q7Z2D5 763 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 SH3RF1Q7Z6J0 888 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 CCDC65Q8IXS2 484 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 TRIML1Q8N9V2 468 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 GSDMAQ96QA5 445 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 C7orf25Q9BPX7 421 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 NAT10Q9H0A0 1025 aaKnown RBP15.8■□□□□ 0.12
SKA1-202ENST00000398452 TSPY26PQ9H489 355 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 EXOC1Q9NV70 894 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 ANO10Q9NW15 660 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 PCDHA5Q9Y5H7 936 aa15.8■□□□□ 0.12
SKA1-202ENST00000398452 IGSF9BQ9UPX0 1349 aa15.79■□□□□ 0.12
SKA1-202ENST00000398452 DUSP11O75319 330 aaKnown RBP15.79■□□□□ 0.12
SKA1-202ENST00000398452 OATP04181 439 aa15.79■□□□□ 0.12
SKA1-202ENST00000398452 RPN1P04843 607 aaKnown RBP15.79■□□□□ 0.12
SKA1-202ENST00000398452 ZNF445P59923 1031 aa15.79■□□□□ 0.12
SKA1-202ENST00000398452 PSMC6P62333 389 aa15.79■□□□□ 0.12
SKA1-202ENST00000398452 CACNB2Q08289 660 aaPredicted RBP15.79■□□□□ 0.12
SKA1-202ENST00000398452 DPYDQ12882 1025 aa15.79■□□□□ 0.12
SKA1-202ENST00000398452 CUL4BQ13620 913 aa15.79■□□□□ 0.12
SKA1-202ENST00000398452 GJC2Q5T442 439 aaPredicted RBP15.79■□□□□ 0.12
SKA1-202ENST00000398452 RBM43Q6ZSC3 357 aaKnown RBP15.79■□□□□ 0.12
SKA1-202ENST00000398452 DYMQ7RTS9 669 aa15.79■□□□□ 0.12
SKA1-202ENST00000398452 KCNK18Q7Z418 384 aa15.79■□□□□ 0.12
SKA1-202ENST00000398452 EXOC8Q8IYI6 725 aa15.79■□□□□ 0.12
SKA1-202ENST00000398452 AFAP1L1Q8TED9 768 aa15.79■□□□□ 0.12
SKA1-202ENST00000398452 DDX12PQ92771 950 aa15.79■□□□□ 0.12
SKA1-202ENST00000398452 CEP170P1Q96L14 293 aa15.79■□□□□ 0.12
SKA1-202ENST00000398452 TRIM9Q9C026 710 aa15.79■□□□□ 0.12
SKA1-202ENST00000398452 ZHX3Q9H4I2 956 aa15.79■□□□□ 0.12
SKA1-202ENST00000398452 PLSCR2Q9NRY7 297 aa15.79■□□□□ 0.12
SKA1-202ENST00000398452 ERAP1Q9NZ08 941 aa15.79■□□□□ 0.12
SKA1-202ENST00000398452 MAFBQ9Y5Q3 323 aaPredicted RBP15.79■□□□□ 0.12
SKA1-202ENST00000398452 A0A087WWV3 80 aa15.78■□□□□ 0.12
SKA1-202ENST00000398452 IGKV6D-21A0A0A0MT36 114 aa15.78■□□□□ 0.12
SKA1-202ENST00000398452 PVALEFA0A1B0GWK0 134 aa15.78■□□□□ 0.12
SKA1-202ENST00000398452 BIN1O00499 593 aa15.78■□□□□ 0.12
SKA1-202ENST00000398452 MSCO60682 206 aa15.78■□□□□ 0.12
SKA1-202ENST00000398452 KPNA6O60684 536 aa15.78■□□□□ 0.12
SKA1-202ENST00000398452 LGR5O75473 907 aa15.78■□□□□ 0.12
SKA1-202ENST00000398452 FAM13AO94988 1023 aa15.78■□□□□ 0.12
SKA1-202ENST00000398452 MMP3P08254 477 aa15.78■□□□□ 0.12
SKA1-202ENST00000398452 CCL5P13501 91 aa15.78■□□□□ 0.12
SKA1-202ENST00000398452 SLC12A3P55017 1021 aa15.78■□□□□ 0.12
SKA1-202ENST00000398452 MDM2Q00987 491 aaPredicted RBP15.78■□□□□ 0.12
SKA1-202ENST00000398452 TYRO3Q06418 890 aa15.78■□□□□ 0.12
SKA1-202ENST00000398452 UGCGQ16739 394 aa15.78■□□□□ 0.12
SKA1-202ENST00000398452 CNNM4Q6P4Q7 775 aa15.78■□□□□ 0.12
SKA1-202ENST00000398452 PADI6Q6TGC4 694 aa15.78■□□□□ 0.12
SKA1-202ENST00000398452 BBXQ8WY36 941 aaPredicted RBP15.78■□□□□ 0.12
SKA1-202ENST00000398452 ERCC4Q92889 916 aaPredicted RBP15.78■□□□□ 0.12
SKA1-202ENST00000398452 TIPINQ9BVW5 301 aa15.78■□□□□ 0.12
SKA1-202ENST00000398452 RNF208Q9H0X6 261 aa15.78■□□□□ 0.12
SKA1-202ENST00000398452 HMX1Q9NP08 348 aaPredicted RBP15.78■□□□□ 0.12
SKA1-202ENST00000398452 GNEQ9Y223 722 aaKnown RBP15.78■□□□□ 0.12
SKA1-202ENST00000398452 PPME1Q9Y570 386 aa15.78■□□□□ 0.12
SKA1-202ENST00000398452 CEP290O15078 2479 aa15.77■□□□□ 0.12
SKA1-202ENST00000398452 CAVIN2O95810 425 aa15.77■□□□□ 0.12
SKA1-202ENST00000398452 LGALS2P05162 132 aa15.77■□□□□ 0.12
SKA1-202ENST00000398452 C6orf222P0C671 652 aaPredicted RBP15.77■□□□□ 0.12
SKA1-202ENST00000398452 CYP11B2P19099 503 aa15.77■□□□□ 0.12
SKA1-202ENST00000398452 MARK3P27448 753 aa15.77■□□□□ 0.12
SKA1-202ENST00000398452 RARRES1P49788 294 aa15.77■□□□□ 0.12
SKA1-202ENST00000398452 POLGP54098 1239 aaPredicted RBP15.77■□□□□ 0.12
SKA1-202ENST00000398452 NLRP12P59046 1061 aa15.77■□□□□ 0.12
SKA1-202ENST00000398452 STIM1Q13586 685 aa15.77■□□□□ 0.12
SKA1-202ENST00000398452 MTERF2Q49AM1 385 aa15.77■□□□□ 0.12
SKA1-202ENST00000398452 UNC13DQ70J99 1090 aa15.77■□□□□ 0.12
SKA1-202ENST00000398452 JPH2Q9BR39 696 aaPredicted RBP15.77■□□□□ 0.12
SKA1-202ENST00000398452 KATNAL1Q9BW62 490 aa15.77■□□□□ 0.12
SKA1-202ENST00000398452 PANK4Q9NVE7 773 aa15.77■□□□□ 0.12
SKA1-202ENST00000398452 TUBE1Q9UJT0 475 aa15.77■□□□□ 0.12
SKA1-202ENST00000398452 COL4A3BPQ9Y5P4 624 aa15.77■□□□□ 0.12
SKA1-202ENST00000398452 MKI67P46013 3256 aaKnown RBP15.76■□□□□ 0.11
SKA1-202ENST00000398452 MYMKA6NI61 221 aa15.76■□□□□ 0.11
SKA1-202ENST00000398452 HBP1O60381 514 aa15.76■□□□□ 0.11
SKA1-202ENST00000398452 USO1O60763 962 aaKnown RBP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms