RNA–Protein interactions for RNA: ENST00000397901.7

CHMP1A-201, Transcript of charged multivesicular body protein 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP1A, Length 2,483 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-201ENST00000397901 UFL1O94874 794 aa17.42■□□□□ 0.38
CHMP1A-201ENST00000397901 ATP2B4P23634 1241 aa17.42■□□□□ 0.38
CHMP1A-201ENST00000397901 TRAF1Q13077 416 aa17.42■□□□□ 0.38
CHMP1A-201ENST00000397901 HLTFQ14527 1009 aaKnown RBP eCLIP17.42■□□□□ 0.38
CHMP1A-201ENST00000397901 CDC37Q16543 378 aaPredicted RBP17.42■□□□□ 0.38
CHMP1A-201ENST00000397901 CAPRIN2Q6IMN6 1127 aaKnown RBP17.42■□□□□ 0.38
CHMP1A-201ENST00000397901 BZW1Q7L1Q6 419 aaKnown RBP17.42■□□□□ 0.38
CHMP1A-201ENST00000397901 TRIM59Q8IWR1 403 aa17.42■□□□□ 0.38
CHMP1A-201ENST00000397901 RBM17Q96I25 401 aaKnown RBP17.42■□□□□ 0.38
CHMP1A-201ENST00000397901 SPAG5Q96R06 1193 aa17.42■□□□□ 0.38
CHMP1A-201ENST00000397901 QTRT2Q9H974 415 aaKnown RBP17.42■□□□□ 0.38
CHMP1A-201ENST00000397901 BMP2KQ9NSY1 1161 aaPredicted RBP17.42■□□□□ 0.38
CHMP1A-201ENST00000397901 BRWD3Q6RI45 1802 aa17.42■□□□□ 0.38
CHMP1A-201ENST00000397901 C5orf60A6NFR6 353 aa17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 TRAPPC3O43617 180 aa17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 ACTN1P12814 892 aa17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 IL1R1P14778 569 aa17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 PEX19P40855 299 aa17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 HERC4Q5GLZ8 1057 aaPredicted RBP17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 USP38Q8NB14 1042 aa17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 CCHCR1Q8TD31 782 aa17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 TCP11Q8WWU5 503 aa17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 TAF4BQ92750 862 aa17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 TBC1D31Q96DN5 1066 aa17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 CPSF2Q9P2I0 782 aaKnown RBP17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 KIAA1024Q9UPX6 916 aa17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 C15orf41Q9Y2V0 281 aa17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 HOXA10P31260 410 aaPredicted RBP17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 TNNC1P63316 161 aa17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 HVCN1Q96D96 273 aa17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 CEP63Q96MT8 703 aa17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 BAIAP2L1Q9UHR4 511 aa17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 GGA1Q9UJY5 639 aa17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 PLAAQ9Y263 795 aa17.41■□□□□ 0.38
CHMP1A-201ENST00000397901 GOLGA6L10A6NI86 522 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 PECAM1P16284 738 aaPredicted RBP17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 HPDP32754 393 aaPredicted RBP17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 MYO1EQ12965 1108 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 GPBP1Q86WP2 473 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 PARD3BQ8TEW8 1205 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 STAMBPL1Q96FJ0 436 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 PCDHA12Q9UN75 941 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 LTBP1Q14766 1721 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 GPR75-ASB3A0A0A6YYF3 556 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 POTEB3A0JP26 581 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 POTECB2RU33 542 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 PPP1R11O60927 126 aaPredicted RBP17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 BBOX1O75936 387 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 ADAM9Q13443 819 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 RPS6KA1Q15418 735 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 POTEBQ6S5H4 581 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 ARHGAP27Q6ZUM4 889 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 WHAMMQ8TF30 809 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 SCFD1Q8WVM8 642 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 CCT6BQ92526 530 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 THOC1Q96FV9 657 aaKnown RBP17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 GANQ9H2C0 597 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 TMBIM4Q9HC24 238 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 SH3BP1Q9Y3L3 701 aa17.4■□□□□ 0.38
CHMP1A-201ENST00000397901 KLRG2A4D1S0 409 aaPredicted RBP17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 hCG_1984214I3L0E3 225 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 POLRMTO00411 1230 aaKnown RBP17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 MPHOSPH10O00566 681 aaKnown RBP17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 PLA2G4BP0C869 781 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 ERVK-9P63128 1117 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 PTK2Q05397 1052 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 PICALMQ13492 652 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 RIPK1Q13546 671 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 QPCTQ16769 361 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 MIS18BP1Q6P0N0 1132 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 DDX42Q86XP3 938 aaKnown RBP eCLIP17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 CCDC65Q8IXS2 484 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 ZNF713Q8N859 430 aaPredicted RBP17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 OR2W6PQ8NHA6 318 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 MTMR4Q9NYA4 1195 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 LRRC37AA6NMS7 1700 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 CEP104O60308 925 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 SMNDC1O75940 238 aaKnown RBP eCLIP17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 GNA14O95837 355 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 KRT18P05783 430 aaKnown RBP17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 AKR1B1P15121 316 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 SLC16A2P36021 539 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 RHBDL3P58872 404 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 KCNH2Q12809 1159 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 TTBK2Q6IQ55 1244 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 FOXR2Q6PJQ5 311 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 FAM210AQ96ND0 272 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 AP1M1Q9BXS5 423 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 JMJD4Q9H9V9 463 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 EMILIN3Q9NT22 766 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 AIPL1Q9NZN9 384 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 POLLQ9UGP5 575 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 PCDHA2Q9Y5H9 948 aa17.39■□□□□ 0.37
CHMP1A-201ENST00000397901 AP1G2O75843 785 aa17.38■□□□□ 0.37
CHMP1A-201ENST00000397901 BYSLQ13895 437 aaKnown RBP17.38■□□□□ 0.37
CHMP1A-201ENST00000397901 SEPT2Q15019 361 aa17.38■□□□□ 0.37
CHMP1A-201ENST00000397901 ASPRV1Q53RT3 343 aa17.38■□□□□ 0.37
CHMP1A-201ENST00000397901 HIBCHQ6NVY1 386 aaPredicted RBP17.38■□□□□ 0.37
CHMP1A-201ENST00000397901 LRIG3Q6UXM1 1119 aa17.38■□□□□ 0.37
CHMP1A-201ENST00000397901 DPP8Q6V1X1 898 aaPredicted RBP17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms