RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ATP6V1E2Q96A05 226 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 NUDCD1Q96RS6 583 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 MTA3Q9BTC8 594 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 BRIP1Q9BX63 1249 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 SNX24Q9Y343 169 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 ADGRG1Q9Y653 693 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 MORC2Q9Y6X9 1032 aaPredicted RBP11□□□□□ -0.65
LIMCH1-203ENST00000396595 PVALEFA0A1B0GWK0 134 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 GGCXP38435 758 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 TFAMQ00059 246 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 SEMA3FQ13275 785 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 THOC5Q13769 683 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 IQCB1Q15051 598 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 ACBD5Q5T8D3 534 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 SPICE1Q8N0Z3 855 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 RPS6KC1Q96S38 1066 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 SEC31BQ9NQW1 1179 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 GINM1Q9NU53 330 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 ERVV-1B6SEH8 477 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 SPAG7O75391 227 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 NCAPG2Q86XI2 1143 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 SRRM1Q8IYB3 904 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 FAM96AQ9H5X1 160 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 GRID2IPA4D2P6 1211 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 TJP3O95049 919 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 CASP2P42575 452 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 IL1RL1Q01638 556 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 PSPC1Q8WXF1 523 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 OLFM3Q96PB7 478 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 TMEM60Q9H2L4 133 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 GOLPH3LQ9H4A5 285 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 ASAP1Q9ULH1 1129 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 GMNCA6NCL1 334 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 RASSF10A6NK89 507 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 NCF2P19878 526 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 GRAMD1BQ3KR37 738 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 CCDC144BQ3MJ40 725 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 FAM47CQ5HY64 1035 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 OR6B2Q6IFH4 312 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 SNX25Q9H3E2 840 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 STOML1Q9UBI4 398 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 COPG1Q9Y678 874 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 USP6P35125 1406 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 WDR17Q8IZU2 1322 aa10.99□□□□□ -0.65
LIMCH1-203ENST00000396595 PLEKHA8P1O95397 391 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 USP17L8P0C7I0 530 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 DDIT3P35638 169 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 ARL4CP56559 192 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 RASGRF1Q13972 1273 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 KRT39Q6A163 491 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 TMED8Q6PL24 325 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 BZW1Q7L1Q6 419 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 RSRC2Q7L4I2 434 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 RBM41Q96IZ5 413 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 DNAJC12Q9UKB3 198 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 SAMD9Q5K651 1589 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 DAB1O75553 588 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 CC2D2BQ6DHV5 1058 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 DDX42Q86XP3 938 aaKnown RBP eCLIP10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 DEPDC1BQ8WUY9 529 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 DYDC2Q96IM9 177 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 BHMT2Q9H2M3 363 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 SAYSD1Q9NPB0 183 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 NXF1Q9UBU9 619 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 LCMT1Q9UIC8 334 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 SRGAP2O75044 1071 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 LTKP29376 864 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 STAT2P52630 851 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 USP14P54578 494 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 PPP2R2AP63151 447 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 IGBP1P78318 339 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 AP3B2Q13367 1082 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 UBE2SQ16763 222 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 CFAP36Q96G28 342 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 TTC25Q96NG3 672 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 FAM193BQ96PV7 902 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 HEG1Q9ULI3 1381 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 CFAP65Q6ZU64 1925 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 H7C1W4 665 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 GYG2O15488 501 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 CUL3Q13618 768 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 TTC13Q8NBP0 860 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 ADD3Q9UEY8 706 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 LZTS1Q9Y250 596 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 PRAMEF22A3QJZ6 481 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 LRRC53A6NM62 1247 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 COPEO14579 308 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 BBOX1O75936 387 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 EEF1B2P24534 225 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 ORC2Q13416 577 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 OSBPL9Q96SU4 736 aa10.98□□□□□ -0.65
LIMCH1-203ENST00000396595 CYP2D7A0A087X1C5 515 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 A0A1B0GW55 424 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 RASA4BC9J798 803 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 RASA4O43374 803 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 LPXNO60711 386 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 DUX4L2P0CJ85 424 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 DUX4L3P0CJ86 424 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 DUX4L4P0CJ87 422 aa10.97□□□□□ -0.65
LIMCH1-203ENST00000396595 DUX4L5P0CJ88 424 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms