RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 FAM107AO95990 144 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 CTNNA1P35221 906 aaKnown RBP13.87□□□□□ -0.19
SHMT1-205ENST00000395684 SHROOM1Q2M3G4 852 aaPredicted RBP13.87□□□□□ -0.19
SHMT1-205ENST00000395684 SPATS2Q86XZ4 545 aaKnown RBP13.87□□□□□ -0.19
SHMT1-205ENST00000395684 RASGEF1CQ8N431 466 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 MXD3Q9BW11 206 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 PPANQ9NQ55 473 aaKnown RBP13.87□□□□□ -0.19
SHMT1-205ENST00000395684 MYH4Q9Y623 1939 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 ASTN1O14525 1302 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 GOLGA6L10A6NI86 522 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 E7EVH7 732 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 MYO1FO00160 1098 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 RIMBP2O15034 1052 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 CLIC2O15247 247 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 SLC26A4O43511 780 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 CALUO43852 315 aaPredicted RBP13.86□□□□□ -0.19
SHMT1-205ENST00000395684 KIAA0754O94854 1291 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 NR3C1P04150 777 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 H2AFZP0C0S5 128 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 RPA1P27694 616 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 ARHGAP4P98171 946 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 H2AFVQ71UI9 128 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 NT5DC3Q86UY8 548 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 CNPY4Q8N129 248 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 PRPF38AQ8NAV1 312 aaKnown RBP13.86□□□□□ -0.19
SHMT1-205ENST00000395684 LENG9Q96B70 501 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 LRRC45Q96CN5 670 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 IKZF4Q9H2S9 585 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 SLC12A6Q9UHW9 1150 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 FBXL5Q9UKA1 691 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 FAM86B1E9PN63 330 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 FAM86B2P0C5J1 330 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 POLD1P28340 1107 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 FOCADQ5VW36 1801 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 YTHDF3Q7Z739 585 aaKnown RBP13.86□□□□□ -0.19
SHMT1-205ENST00000395684 DAAM2Q86T65 1068 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 OLIG1Q8TAK6 271 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 RBM17Q96I25 401 aaKnown RBP13.86□□□□□ -0.19
SHMT1-205ENST00000395684 CELF4Q9BZC1 486 aaKnown RBP13.86□□□□□ -0.19
SHMT1-205ENST00000395684 GCNT4Q9P109 453 aa13.86□□□□□ -0.19
SHMT1-205ENST00000395684 SUCLA2Q9P2R7 463 aaPredicted RBP13.86□□□□□ -0.19
SHMT1-205ENST00000395684 MYO3BQ8WXR4 1341 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 CCDC188H7C350 402 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 TTI1O43156 1089 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 BBOX1O75936 387 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 FSBPO95073 299 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 SCNN1DP51172 638 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 SNAP25P60880 206 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 ZFPM1Q8IX07 1006 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 U2AF1L4Q8WU68 220 aaKnown RBP13.85□□□□□ -0.19
SHMT1-205ENST00000395684 HES6Q96HZ4 224 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 GLT8D2Q9H1C3 349 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 LRRC4CQ9HCJ2 640 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 OSGEPQ9NPF4 335 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 TYW1Q9NV66 732 aaKnown RBP13.85□□□□□ -0.19
SHMT1-205ENST00000395684 PCDHB13Q9Y5F0 798 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 A0A0A6YYK5 440 aaPredicted RBP13.85□□□□□ -0.19
SHMT1-205ENST00000395684 GFPT2O94808 682 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 TMOD1P28289 359 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 CYP4A11Q02928 519 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 NFIAQ12857 509 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 BMT2Q1RMZ1 405 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 LNX1Q8TBB1 728 aaPredicted RBP13.85□□□□□ -0.19
SHMT1-205ENST00000395684 UBLCP1Q8WVY7 318 aaPredicted RBP13.85□□□□□ -0.19
SHMT1-205ENST00000395684 RUSC1Q9BVN2 902 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 BHMT2Q9H2M3 363 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 NR2E1Q9Y466 385 aa13.85□□□□□ -0.19
SHMT1-205ENST00000395684 BTAF1O14981 1849 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 SFI1A8K8P3 1242 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 TGFB1I1O43294 461 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 GCNT3O95395 438 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 HSPA1LP34931 641 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 GALCP54803 685 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 IFT88Q13099 833 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 CDC42EP5Q6NZY7 148 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 MOXD1Q6UVY6 613 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 C6orf89Q6UWU4 347 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 MICALCLQ6ZW33 695 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 ARFGAP2Q8N6H7 521 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 LMBR1Q8WVP7 490 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 SEC14L1Q92503 715 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 BORCS6Q96GS4 357 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 DNAJC18Q9H819 358 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 METTL14Q9HCE5 456 aaKnown RBP13.84□□□□□ -0.19
SHMT1-205ENST00000395684 BCCIPQ9P287 314 aaKnown RBP eCLIP13.84□□□□□ -0.19
SHMT1-205ENST00000395684 CNOT8Q9UFF9 292 aaKnown RBP13.84□□□□□ -0.19
SHMT1-205ENST00000395684 FAM196BA6NMK8 535 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 SRRM3A6NNA2 597 aaPredicted RBP13.84□□□□□ -0.19
SHMT1-205ENST00000395684 DCDC2CA8MYV0 355 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 SERPINB2P05120 415 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 EEF2P13639 858 aaKnown RBP13.84□□□□□ -0.19
SHMT1-205ENST00000395684 ANXA13P27216 316 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 POU5F1Q01860 360 aaKnown RBP13.84□□□□□ -0.19
SHMT1-205ENST00000395684 Q4G0T1 1027 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 MCTP2Q6DN12 878 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 TMC3Q7Z5M5 1100 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 SLC30A5Q8TAD4 765 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 ERMNQ8TAM6 284 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 CYP2W1Q8TAV3 490 aa13.84□□□□□ -0.19
SHMT1-205ENST00000395684 CYFIP2Q96F07 1278 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms