RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 ATP8A2Q9NTI2 1148 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 DAAM1Q9Y4D1 1078 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 ASAP2O43150 1006 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 H2AFZP0C0S5 128 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 MYBL1P10243 752 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 UCHL3P15374 230 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 EIF3BP55884 814 aaKnown RBP17.24■□□□□ 0.35
CKAP4-201ENST00000378026 H2AFVQ71UI9 128 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 KLHL29Q96CT2 875 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 SEC63Q9UGP8 760 aaKnown RBP17.24■□□□□ 0.35
CKAP4-201ENST00000378026 CES2O00748 559 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 PPFIA2O75334 1257 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 TNNI2P48788 182 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 NT5DC3Q86UY8 548 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 ZNF483Q8TF39 744 aaPredicted RBP17.24■□□□□ 0.35
CKAP4-201ENST00000378026 EPB41L4BQ9H329 900 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 HDAC9Q9UKV0 1011 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 AMFRQ9UKV5 643 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 PNMA3Q9UL41 463 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 ZNF804BA4D1E1 1349 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 FOXO6A8MYZ6 492 aa17.23■□□□□ 0.35
CKAP4-201ENST00000378026 FLOT1O75955 427 aa17.23■□□□□ 0.35
CKAP4-201ENST00000378026 KRT18P05783 430 aaKnown RBP17.23■□□□□ 0.35
CKAP4-201ENST00000378026 KRT16P08779 473 aa17.23■□□□□ 0.35
CKAP4-201ENST00000378026 MMP13P45452 471 aa17.23■□□□□ 0.35
CKAP4-201ENST00000378026 NCALDP61601 193 aa17.23■□□□□ 0.35
CKAP4-201ENST00000378026 IRX1P78414 480 aaPredicted RBP17.23■□□□□ 0.35
CKAP4-201ENST00000378026 MAP2K1Q02750 393 aaPredicted RBP17.23■□□□□ 0.35
CKAP4-201ENST00000378026 ITIH4Q14624 930 aa17.23■□□□□ 0.35
CKAP4-201ENST00000378026 SPTY2D1Q68D10 685 aaPredicted RBP17.23■□□□□ 0.35
CKAP4-201ENST00000378026 CCDC25Q86WR0 208 aa17.23■□□□□ 0.35
CKAP4-201ENST00000378026 DNAJC19Q96DA6 116 aa17.23■□□□□ 0.35
CKAP4-201ENST00000378026 FGFR1OP2Q9NVK5 253 aa17.23■□□□□ 0.35
CKAP4-201ENST00000378026 AJAP1Q9UKB5 411 aaPredicted RBP17.23■□□□□ 0.35
CKAP4-201ENST00000378026 RTCBQ9Y3I0 505 aaKnown RBP17.23■□□□□ 0.35
CKAP4-201ENST00000378026 CASZ1Q86V15 1759 aa17.23■□□□□ 0.35
CKAP4-201ENST00000378026 ERVV-1B6SEH8 477 aa17.23■□□□□ 0.35
CKAP4-201ENST00000378026 RARAP10276 462 aa17.23■□□□□ 0.35
CKAP4-201ENST00000378026 NR2F2P24468 414 aa17.23■□□□□ 0.35
CKAP4-201ENST00000378026 CENPTQ96BT3 561 aa17.23■□□□□ 0.35
CKAP4-201ENST00000378026 ZBTB10Q96DT7 871 aa17.23■□□□□ 0.35
CKAP4-201ENST00000378026 L3MBTL3Q96JM7 780 aaPredicted RBP17.23■□□□□ 0.35
CKAP4-201ENST00000378026 SEPT11Q9NVA2 429 aaKnown RBP17.23■□□□□ 0.35
CKAP4-201ENST00000378026 PPP1R9AQ9ULJ8 1098 aa17.23■□□□□ 0.35
CKAP4-201ENST00000378026 SLIT2O94813 1529 aa17.23■□□□□ 0.35
CKAP4-201ENST00000378026 CCDC169A6NNP5 214 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 GSTA1P08263 222 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 ZBTB48P10074 688 aaPredicted RBP17.22■□□□□ 0.35
CKAP4-201ENST00000378026 TRIM68Q6AZZ1 485 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 CRELD2Q6UXH1 353 aaPredicted RBP17.22■□□□□ 0.35
CKAP4-201ENST00000378026 C3orf67Q6ZVT6 689 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 MARCH10Q8NA82 808 aaPredicted RBP17.22■□□□□ 0.35
CKAP4-201ENST00000378026 MTMR9Q96QG7 549 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 RAB17Q9H0T7 212 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 PABPC3Q9H361 631 aaKnown RBP17.22■□□□□ 0.35
CKAP4-201ENST00000378026 BMP2KQ9NSY1 1161 aaPredicted RBP17.22■□□□□ 0.35
CKAP4-201ENST00000378026 PALM3A6NDB9 673 aaPredicted RBP17.22■□□□□ 0.35
CKAP4-201ENST00000378026 GFPT2O94808 682 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 GRIK3Q13003 919 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 PSMD2Q13200 908 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 ARHGEF10LQ9HCE6 1279 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 EMILIN3Q9NT22 766 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 TMOD4Q9NZQ9 345 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 AFF2P51816 1311 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 CFAP73A6NFT4 308 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 TCP11X1B4DZS4 312 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 BHMG1C9JSJ3 638 aaPredicted RBP17.22■□□□□ 0.35
CKAP4-201ENST00000378026 ADCY1Q08828 1119 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 LLGL1Q15334 1064 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 EXOC3L4Q17RC7 722 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 ANKRD42Q8N9B4 389 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 ERP44Q9BS26 406 aa17.22■□□□□ 0.35
CKAP4-201ENST00000378026 CETN3O15182 167 aa17.21■□□□□ 0.35
CKAP4-201ENST00000378026 EVI5O60447 810 aa17.21■□□□□ 0.35
CKAP4-201ENST00000378026 TRHP20396 242 aaPredicted RBP17.21■□□□□ 0.35
CKAP4-201ENST00000378026 CALRP27797 417 aaKnown RBP17.21■□□□□ 0.35
CKAP4-201ENST00000378026 GALCP54803 685 aa17.21■□□□□ 0.35
CKAP4-201ENST00000378026 ZNF268Q14587 947 aaPredicted RBP17.21■□□□□ 0.35
CKAP4-201ENST00000378026 DZIP1Q86YF9 867 aaKnown RBP17.21■□□□□ 0.35
CKAP4-201ENST00000378026 RASGEF1CQ8N431 466 aa17.21■□□□□ 0.35
CKAP4-201ENST00000378026 PARD3BQ8TEW8 1205 aa17.21■□□□□ 0.35
CKAP4-201ENST00000378026 SCFD1Q8WVM8 642 aa17.21■□□□□ 0.35
CKAP4-201ENST00000378026 SAAL1Q96ER3 474 aa17.21■□□□□ 0.35
CKAP4-201ENST00000378026 RAB34Q9BZG1 259 aa17.21■□□□□ 0.35
CKAP4-201ENST00000378026 SPATS2LQ9NUQ6 558 aaKnown RBP17.21■□□□□ 0.35
CKAP4-201ENST00000378026 SUCLA2Q9P2R7 463 aaPredicted RBP17.21■□□□□ 0.35
CKAP4-201ENST00000378026 KIAA1024Q9UPX6 916 aa17.21■□□□□ 0.35
CKAP4-201ENST00000378026 FRMPD2Q68DX3 1309 aaPredicted RBP17.21■□□□□ 0.35
CKAP4-201ENST00000378026 CREB1P16220 341 aa17.21■□□□□ 0.35
CKAP4-201ENST00000378026 DCAF12L1Q5VU92 463 aa17.21■□□□□ 0.35
CKAP4-201ENST00000378026 GDAP1Q8TB36 358 aa17.21■□□□□ 0.35
CKAP4-201ENST00000378026 C18orf8Q96DM3 657 aa17.21■□□□□ 0.35
CKAP4-201ENST00000378026 NSRP1Q9H0G5 558 aaKnown RBP17.21■□□□□ 0.35
CKAP4-201ENST00000378026 BATF3Q9NR55 127 aa17.21■□□□□ 0.35
CKAP4-201ENST00000378026 CACNA1SQ13698 1873 aa17.2■□□□□ 0.34
CKAP4-201ENST00000378026 DDX3XO00571 662 aaKnown RBP eCLIP17.2■□□□□ 0.347e-9■■■□□ 15.7
CKAP4-201ENST00000378026 IL6STP40189 918 aaPredicted RBP17.2■□□□□ 0.34
CKAP4-201ENST00000378026 POU5F1Q01860 360 aaKnown RBP17.2■□□□□ 0.34
CKAP4-201ENST00000378026 RIPK1Q13546 671 aa17.2■□□□□ 0.34
CKAP4-201ENST00000378026 UBE2SQ16763 222 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms