RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 SYT10Q6XYQ8 523 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 KLHL23Q8NBE8 558 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 MKNK1Q9BUB5 465 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 NCOA5Q9HCD5 579 aaKnown RBP4.03□□□□□ -1.76
SYNE1-207ENST00000367255 DISP3Q9P2K9 1392 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 STX7O15400 261 aaKnown RBP4.03□□□□□ -1.76
SYNE1-207ENST00000367255 EMC10Q5UCC4 262 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 GATAD2AQ86YP4 633 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 IPO11Q9UI26 975 aaKnown RBP4.03□□□□□ -1.76
SYNE1-207ENST00000367255 MAGEA13PA6NCF6 341 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 TRPA1O75762 1119 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 PYGLP06737 847 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 HCLS1P14317 486 aaPredicted RBP4.03□□□□□ -1.76
SYNE1-207ENST00000367255 SLC1A1P43005 524 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 PDE1AP54750 535 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 KRT74Q7RTS7 529 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 TMC6Q7Z403 805 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 TAF4O00268 1085 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 TNPO2O14787 897 aaKnown RBP4.03□□□□□ -1.76
SYNE1-207ENST00000367255 P4HBP07237 508 aaKnown RBP4.03□□□□□ -1.76
SYNE1-207ENST00000367255 ABCB1P08183 1280 aaPredicted RBP4.03□□□□□ -1.76
SYNE1-207ENST00000367255 PKP1Q13835 747 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 MAGEB10Q96LZ2 347 aaPredicted RBP4.03□□□□□ -1.76
SYNE1-207ENST00000367255 BAG3O95817 575 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 ZBED1O96006 694 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 ACTN1P12814 892 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 FGFR3P22607 806 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 RWDD4Q6NW29 188 aaKnown RBP4.03□□□□□ -1.76
SYNE1-207ENST00000367255 HACE1Q8IYU2 909 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 SPATA5Q8NB90 893 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 AMOTL2Q9Y2J4 779 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 IFNA8P32881 189 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 GOLPH3LQ9H4A5 285 aa4.03□□□□□ -1.76
SYNE1-207ENST00000367255 PCDH11YQ9BZA8 1340 aa4.03□□□□□ -1.77
SYNE1-207ENST00000367255 ATP5J2-PTCD1G3V325 749 aa4.03□□□□□ -1.77
SYNE1-207ENST00000367255 PSMD12O00232 456 aaPredicted RBP4.03□□□□□ -1.77
SYNE1-207ENST00000367255 PTCD1O75127 700 aaKnown RBP4.03□□□□□ -1.77
SYNE1-207ENST00000367255 NAT2P11245 290 aa4.03□□□□□ -1.77
SYNE1-207ENST00000367255 KPNA1P52294 538 aaPredicted RBP4.03□□□□□ -1.77
SYNE1-207ENST00000367255 KLHL38Q2WGJ6 581 aa4.03□□□□□ -1.77
SYNE1-207ENST00000367255 AGBL2Q5U5Z8 902 aa4.03□□□□□ -1.77
SYNE1-207ENST00000367255 AATFQ9NY61 560 aaKnown RBP eCLIP4.03□□□□□ -1.77
SYNE1-207ENST00000367255 SESN1Q9Y6P5 492 aa4.03□□□□□ -1.77
SYNE1-207ENST00000367255 MPRIPQ6WCQ1 1025 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 VSIG1Q86XK7 387 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 RASA2Q15283 850 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 ZC2HC1CQ53FD0 456 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-207ENST00000367255 CEP95Q96GE4 821 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 RHOBTB2Q9BYZ6 727 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 CNGA3Q16281 694 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 C14orf93Q9H972 538 aaKnown RBP4.02□□□□□ -1.77
SYNE1-207ENST00000367255 RGS16O15492 202 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-207ENST00000367255 POLD2P49005 469 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 TUBGCP3Q96CW5 907 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 PPP1R13BQ96KQ4 1090 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 VPS33BQ9H267 617 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 MLXIPLQ9NP71 852 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 NOTOA8MTQ0 251 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 ARPC4P59998 168 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 LRRC8EQ6NSJ5 796 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 SGF29Q96ES7 293 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 RAB21Q9UL25 225 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 NCKAP5LQ9HCH0 1330 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 BIVM-ERCC5R4GMW8 1640 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 VPS4BO75351 444 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 GAP43P17677 238 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 ADD2P35612 726 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 CREMQ03060 361 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 KCNB1Q14721 858 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 ANKLE2Q86XL3 938 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 NXF1Q9UBU9 619 aaKnown RBP4.02□□□□□ -1.77
SYNE1-207ENST00000367255 CCDC194A0A1B0GVG4 234 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 GUCY1B2O75343 617 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 NR4A1P22736 598 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 LRRC8AQ8IWT6 810 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 CDAN1Q8IWY9 1227 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 MRPL47Q9HD33 250 aaKnown RBP4.02□□□□□ -1.77
SYNE1-207ENST00000367255 TTC4O95801 387 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 IFIT1P09914 478 aaKnown RBP4.02□□□□□ -1.77
SYNE1-207ENST00000367255 LRPAP1P30533 357 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 FAM189A2Q15884 450 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 CCDC137Q6PK04 289 aaKnown RBP4.02□□□□□ -1.77
SYNE1-207ENST00000367255 SPOCK3Q9BQ16 436 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 TSC22D4Q9Y3Q8 395 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 GSAPA4D1B5 854 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 G3V3G9 751 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 H0Y626 953 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 KRT13P13646 458 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 ERFP50548 548 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 CCNHP51946 323 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-207ENST00000367255 DCAF8Q5TAQ9 597 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 PI16Q6UXB8 463 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 MAB21L3Q8N8X9 362 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 MPP4Q96JB8 637 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 HNRNPCP07910 306 aaKnown RBP eCLIP4.02□□□□□ -1.77
SYNE1-207ENST00000367255 CASP5P51878 434 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 UBXN1Q04323 297 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 BCAS4Q8TDM0 211 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 HDAC11Q96DB2 347 aa4.02□□□□□ -1.77
SYNE1-207ENST00000367255 USP26Q9BXU7 913 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms