RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 DDIT3P35638 169 aa20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 FMR1Q06787 632 aaKnown RBP eCLIP20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 KCNH2Q12809 1159 aa20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 BRDTQ58F21 947 aaPredicted RBP20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 KCTD1Q719H9 257 aa20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 PROM2Q8N271 834 aa20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 BHMT2Q9H2M3 363 aa20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 TMEM206Q9H813 350 aa20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 WDR46O15213 610 aaKnown RBP20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 NR1H3Q13133 447 aa20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 ARHGEF16Q5VV41 709 aa20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 HEMGNQ9BXL5 484 aa20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 LIMA1Q9UHB6 759 aaKnown RBP20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 MCAMP43121 646 aa20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 DACT3Q96B18 629 aaPredicted RBP20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 SLITRK6Q9H5Y7 841 aa20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 SMYD3Q9H7B4 428 aa20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 PNPLA6Q8IY17 1366 aa20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 UBN2Q6ZU65 1347 aa20.97■□□□□ 0.95
CCDC88B-202ENST00000356786 KRT37O76014 449 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 KRT14P02533 472 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 LSP1P33241 339 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 SCNN1DP51172 638 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 MDM2Q00987 491 aaPredicted RBP20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 KIF22Q14807 665 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 TSGA10IPQ3SY00 556 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 BATF3Q9NR55 127 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 NOC2LQ9Y3T9 749 aaKnown RBP20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 KIDINS220Q9ULH0 1771 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 SORBS3O60504 671 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 USP17L8P0C7I0 530 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 UBE2SQ16763 222 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 TRIM56Q9BRZ2 755 aaKnown RBP20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 L2HGDHQ9H9P8 463 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 SYNJ2BP-COX16A0A087WUM0 186 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 ZRANB2O95218 330 aaKnown RBP eCLIP20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 DYNLL2Q96FJ2 89 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 ZNF577Q9BSK1 485 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 COX16Q9P0S2 106 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 hCG_1984214I3L0E3 225 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 COPEO14579 308 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 RNF207Q6ZRF8 634 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 STAG2Q8N3U4 1231 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 ZNF713Q8N859 430 aaPredicted RBP20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 TLK1Q9UKI8 766 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 ASAP1Q9ULH1 1129 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 FIS1Q9Y3D6 152 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 ZNF804BA4D1E1 1349 aa20.96■□□□□ 0.95
CCDC88B-202ENST00000356786 IGKV5-2P06315 115 aa20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 POLGP54098 1239 aaPredicted RBP20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 EPHB1P54762 984 aa20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 METTL13Q8N6R0 699 aa20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 FGD4Q96M96 766 aa20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 FAM161BQ96MY7 647 aa20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 ANAPC7Q9UJX3 599 aa20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 NEDD4P46934 1319 aa20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 SEC24CP53992 1094 aa20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 DEUP1Q05D60 604 aa20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 DNAAF3Q8N9W5 541 aa20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 CFAP36Q96G28 342 aa20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 USP17L3A6NCW0 530 aa20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 USP17L4A6NCW7 530 aa20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 EEF1DP29692 281 aaKnown RBP20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 HNRNPH1P31943 449 aaKnown RBP20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 USP17L1Q7RTZ2 530 aa20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 WDR11Q9BZH6 1224 aa20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 PVALEFA0A1B0GWK0 134 aa20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 PHF20L1A8MW92 1017 aa20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 BYSLQ13895 437 aaKnown RBP20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 TRIM10Q9UDY6 481 aa20.95■□□□□ 0.94
CCDC88B-202ENST00000356786 POTEMA6NI47 508 aa20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 FAM81BQ96LP2 452 aa20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 CCDC68Q9H2F9 335 aa20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 TTLL1O95922 423 aa20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 CCNYQ8ND76 341 aa20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 CFAP69A5D8W1 941 aa20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 CHRNA3P32297 505 aa20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 CASP2P42575 452 aa20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 PDCD2Q16342 344 aaPredicted RBP20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 LY9Q9HBG7 655 aa20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 CNOT8Q9UFF9 292 aaKnown RBP20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 hCG_2014768A0A024R1R8 64 aa20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 FAM187AA6NFU0 413 aa20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 SFI1A8K8P3 1242 aa20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 STOX1Q6ZVD7 989 aa20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 KCTD6Q8NC69 237 aa20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 ADD3Q9UEY8 706 aaKnown RBP20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 WDR19Q8NEZ3 1342 aa20.94■□□□□ 0.94
CCDC88B-202ENST00000356786 ESYT2A0FGR8 921 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 ZBBXA8MT70 800 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 GNGT2O14610 69 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 ARFIP2P53365 341 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 GPC5P78333 572 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 IRX1P78414 480 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 LCA5Q86VQ0 697 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 SPICE1Q8N0Z3 855 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 CCDC17Q96LX7 622 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 CSRNP1Q96S65 589 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms