RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 GNAT1P11488 350 aa24.77■■□□□ 1.56
SHMT1-203ENST00000354098 CYP2C9P11712 490 aa24.77■■□□□ 1.56
SHMT1-203ENST00000354098 SHC4Q6S5L8 630 aa24.77■■□□□ 1.56
SHMT1-203ENST00000354098 KCNK18Q7Z418 384 aa24.77■■□□□ 1.56
SHMT1-203ENST00000354098 DPF3Q92784 378 aa24.77■■□□□ 1.56
SHMT1-203ENST00000354098 CEP89Q96ST8 783 aa24.77■■□□□ 1.56
SHMT1-203ENST00000354098 PCDH10Q9P2E7 1040 aa24.77■■□□□ 1.56
SHMT1-203ENST00000354098 KLRC1P26715 233 aa24.76■■□□□ 1.55
SHMT1-203ENST00000354098 KARSQ15046 597 aaKnown RBP24.76■■□□□ 1.55
SHMT1-203ENST00000354098 HYIQ5T013 277 aa24.76■■□□□ 1.55
SHMT1-203ENST00000354098 MTHFD1LQ6UB35 978 aa24.76■■□□□ 1.55
SHMT1-203ENST00000354098 WNT8BQ93098 351 aa24.76■■□□□ 1.55
SHMT1-203ENST00000354098 NACC1Q96RE7 527 aa24.76■■□□□ 1.55
SHMT1-203ENST00000354098 CYP26B1Q9NR63 512 aa24.76■■□□□ 1.55
SHMT1-203ENST00000354098 TUBE1Q9UJT0 475 aa24.76■■□□□ 1.55
SHMT1-203ENST00000354098 NOD1Q9Y239 953 aa24.76■■□□□ 1.55
SHMT1-203ENST00000354098 COL1A2P08123 1366 aa24.76■■□□□ 1.55
SHMT1-203ENST00000354098 MBLAC1A4D2B0 266 aaPredicted RBP24.75■■□□□ 1.55
SHMT1-203ENST00000354098 TLR3O15455 904 aaKnown RBP24.75■■□□□ 1.55
SHMT1-203ENST00000354098 MUTP22033 750 aa24.75■■□□□ 1.55
SHMT1-203ENST00000354098 RUFY4Q6ZNE9 571 aa24.75■■□□□ 1.55
SHMT1-203ENST00000354098 OTUD6AQ7L8S5 288 aa24.75■■□□□ 1.55
SHMT1-203ENST00000354098 SH3RF1Q7Z6J0 888 aa24.75■■□□□ 1.55
SHMT1-203ENST00000354098 C7orf61Q8IZ16 206 aa24.75■■□□□ 1.55
SHMT1-203ENST00000354098 CEP170P1Q96L14 293 aa24.75■■□□□ 1.55
SHMT1-203ENST00000354098 CCSER1Q9C0I3 900 aa24.75■■□□□ 1.55
SHMT1-203ENST00000354098 E9PMD0 336 aa24.75■■□□□ 1.55
SHMT1-203ENST00000354098 EVI5O60447 810 aa24.75■■□□□ 1.55
SHMT1-203ENST00000354098 C22orf31O95567 290 aa24.75■■□□□ 1.55
SHMT1-203ENST00000354098 XKR9Q5GH70 373 aa24.75■■□□□ 1.55
SHMT1-203ENST00000354098 LRRC15Q8TF66 581 aa24.75■■□□□ 1.55
SHMT1-203ENST00000354098 DHX38Q92620 1227 aaKnown RBP24.75■■□□□ 1.55
SHMT1-203ENST00000354098 ANKEF1Q9NU02 776 aa24.75■■□□□ 1.55
SHMT1-203ENST00000354098 TRIP12Q14669 1992 aaPredicted RBP24.74■■□□□ 1.55
SHMT1-203ENST00000354098 CLTBP09497 229 aa24.74■■□□□ 1.55
SHMT1-203ENST00000354098 XRCC6P12956 609 aaKnown RBP eCLIP24.74■■□□□ 1.55
SHMT1-203ENST00000354098 RARRES1P49788 294 aa24.74■■□□□ 1.55
SHMT1-203ENST00000354098 TPRNQ4KMQ1 711 aa24.74■■□□□ 1.55
SHMT1-203ENST00000354098 TMEM119Q4V9L6 283 aa24.74■■□□□ 1.55
SHMT1-203ENST00000354098 SERINC5Q86VE9 423 aa24.74■■□□□ 1.55
SHMT1-203ENST00000354098 CALML4Q96GE6 196 aa24.74■■□□□ 1.55
SHMT1-203ENST00000354098 CDK5RAP3Q96JB5 506 aa24.74■■□□□ 1.55
SHMT1-203ENST00000354098 PANK2Q9BZ23 570 aa24.74■■□□□ 1.55
SHMT1-203ENST00000354098 PDLIM7Q9NR12 457 aa24.74■■□□□ 1.55
SHMT1-203ENST00000354098 KDM3AQ9Y4C1 1321 aa24.74■■□□□ 1.55
SHMT1-203ENST00000354098 RASSF8Q8NHQ8 419 aa24.73■■□□□ 1.55
SHMT1-203ENST00000354098 NT5C3AQ9H0P0 336 aa24.73■■□□□ 1.55
SHMT1-203ENST00000354098 PRDM5Q9NQX1 630 aaPredicted RBP24.73■■□□□ 1.55
SHMT1-203ENST00000354098 TMEM39AQ9NV64 488 aa24.73■■□□□ 1.55
SHMT1-203ENST00000354098 A0A087X0B3 334 aa24.72■■□□□ 1.55
SHMT1-203ENST00000354098 TRIM43BA6NCK2 446 aa24.72■■□□□ 1.55
SHMT1-203ENST00000354098 PLCG1P19174 1290 aa24.72■■□□□ 1.55
SHMT1-203ENST00000354098 PTK7Q13308 1070 aa24.72■■□□□ 1.55
SHMT1-203ENST00000354098 TRIM43Q96BQ3 446 aaPredicted RBP24.72■■□□□ 1.55
SHMT1-203ENST00000354098 BHMT2Q9H2M3 363 aa24.72■■□□□ 1.55
SHMT1-203ENST00000354098 BMP2KQ9NSY1 1161 aaPredicted RBP24.72■■□□□ 1.55
SHMT1-203ENST00000354098 DBR1Q9UK59 544 aaKnown RBP24.72■■□□□ 1.55
SHMT1-203ENST00000354098 TBX21Q9UL17 535 aa24.72■■□□□ 1.55
SHMT1-203ENST00000354098 DNM3Q9UQ16 869 aa24.72■■□□□ 1.55
SHMT1-203ENST00000354098 PCDHA2Q9Y5H9 948 aa24.72■■□□□ 1.55
SHMT1-203ENST00000354098 TBC1D8BQ0IIM8 1120 aa24.72■■□□□ 1.55
SHMT1-203ENST00000354098 RESP18Q5W5W9 173 aa24.72■■□□□ 1.55
SHMT1-203ENST00000354098 ADALQ6DHV7 355 aa24.72■■□□□ 1.55
SHMT1-203ENST00000354098 KAT6AQ92794 2004 aa24.72■■□□□ 1.55
SHMT1-203ENST00000354098 RBAK-RBAKDNI3L0D1 243 aa24.71■■□□□ 1.55
SHMT1-203ENST00000354098 SLC26A4O43511 780 aa24.71■■□□□ 1.55
SHMT1-203ENST00000354098 TXLNAP40222 546 aa24.71■■□□□ 1.55
SHMT1-203ENST00000354098 LRRC71Q8N4P6 559 aa24.71■■□□□ 1.55
SHMT1-203ENST00000354098 METTL13Q8N6R0 699 aa24.71■■□□□ 1.55
SHMT1-203ENST00000354098 FAM49AQ9H0Q0 323 aaPredicted RBP24.71■■□□□ 1.55
SHMT1-203ENST00000354098 SUGCTQ9HAC7 445 aa24.71■■□□□ 1.55
SHMT1-203ENST00000354098 MAFO75444 373 aaPredicted RBP24.7■■□□□ 1.54
SHMT1-203ENST00000354098 EYA4O95677 639 aa24.7■■□□□ 1.54
SHMT1-203ENST00000354098 ITGB8P26012 769 aa24.7■■□□□ 1.54
SHMT1-203ENST00000354098 TRIM71Q2Q1W2 868 aaKnown RBP24.7■■□□□ 1.54
SHMT1-203ENST00000354098 EFCAB12Q6NXP0 572 aa24.7■■□□□ 1.54
SHMT1-203ENST00000354098 PDILTQ8N807 584 aa24.7■■□□□ 1.54
SHMT1-203ENST00000354098 DNAJB3Q8WWF6 145 aa24.7■■□□□ 1.54
SHMT1-203ENST00000354098 CCDC43Q96MW1 224 aaKnown RBP24.7■■□□□ 1.54
SHMT1-203ENST00000354098 BLOC1S4Q9NUP1 217 aa24.7■■□□□ 1.54
SHMT1-203ENST00000354098 CCDC39Q9UFE4 941 aa24.7■■□□□ 1.54
SHMT1-203ENST00000354098 UMODL1Q5DID0 1318 aa24.7■■□□□ 1.54
SHMT1-203ENST00000354098 MAGEB2O15479 319 aa24.69■■□□□ 1.54
SHMT1-203ENST00000354098 SYN1P17600 705 aa24.69■■□□□ 1.54
SHMT1-203ENST00000354098 CLCN3P51790 818 aa24.69■■□□□ 1.54
SHMT1-203ENST00000354098 MKRN4PQ13434 485 aaPredicted RBP24.69■■□□□ 1.54
SHMT1-203ENST00000354098 DRP2Q13474 957 aa24.69■■□□□ 1.54
SHMT1-203ENST00000354098 LINC01465Q8N7H1 131 aa24.69■■□□□ 1.54
SHMT1-203ENST00000354098 NOC4LQ9BVI4 516 aaKnown RBP24.69■■□□□ 1.54
SHMT1-203ENST00000354098 PPP1R12CQ9BZL4 782 aa24.69■■□□□ 1.54
SHMT1-203ENST00000354098 DHX33Q9H6R0 707 aaKnown RBP24.69■■□□□ 1.54
SHMT1-203ENST00000354098 IGKV6-21A0A0C4DH24 114 aa24.69■■□□□ 1.54
SHMT1-203ENST00000354098 SMIM35A0A1B0GVV1 85 aa24.69■■□□□ 1.54
SHMT1-203ENST00000354098 POLGP54098 1239 aaPredicted RBP24.69■■□□□ 1.54
SHMT1-203ENST00000354098 RRAGBQ5VZM2 374 aa24.69■■□□□ 1.54
SHMT1-203ENST00000354098 TAF2Q6P1X5 1199 aa24.69■■□□□ 1.54
SHMT1-203ENST00000354098 KIAA0319LQ8IZA0 1049 aa24.69■■□□□ 1.54
SHMT1-203ENST00000354098 HIPK3Q9H422 1215 aa24.69■■□□□ 1.54
SHMT1-203ENST00000354098 ZMYND8Q9ULU4 1186 aaPredicted RBP24.69■■□□□ 1.54
SHMT1-203ENST00000354098 A0A1B0GVL5 298 aa24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms