RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 FAM13AO94988 1023 aa24.24■■□□□ 1.47
UPF3A-201ENST00000351487 KCNA1Q09470 495 aa24.24■■□□□ 1.47
UPF3A-201ENST00000351487 ZNF571Q7Z3V5 609 aaPredicted RBP24.24■■□□□ 1.47
UPF3A-201ENST00000351487 PIGOQ8TEQ8 1089 aa24.24■■□□□ 1.47
UPF3A-201ENST00000351487 CHURC1Q8WUH1 139 aa24.24■■□□□ 1.47
UPF3A-201ENST00000351487 DYDC2Q96IM9 177 aa24.24■■□□□ 1.47
UPF3A-201ENST00000351487 BCAS3Q9H6U6 928 aa24.24■■□□□ 1.47
UPF3A-201ENST00000351487 EHMT1Q9H9B1 1298 aa24.24■■□□□ 1.47
UPF3A-201ENST00000351487 PRELPP51888 382 aa24.23■■□□□ 1.47
UPF3A-201ENST00000351487 JAM2P57087 298 aa24.23■■□□□ 1.47
UPF3A-201ENST00000351487 RBM46Q8TBY0 533 aaKnown RBP24.23■■□□□ 1.47
UPF3A-201ENST00000351487 SEL1LQ9UBV2 794 aa24.23■■□□□ 1.47
UPF3A-201ENST00000351487 MYH11P35749 1972 aa24.23■■□□□ 1.47
UPF3A-201ENST00000351487 PHACTR2O75167 634 aa24.23■■□□□ 1.47
UPF3A-201ENST00000351487 VIL1P09327 827 aaKnown RBP24.23■■□□□ 1.47
UPF3A-201ENST00000351487 ZNF131P52739 623 aa24.23■■□□□ 1.47
UPF3A-201ENST00000351487 C8orf74Q6P047 294 aa24.23■■□□□ 1.47
UPF3A-201ENST00000351487 RSBN1LQ6PCB5 846 aaPredicted RBP24.23■■□□□ 1.47
UPF3A-201ENST00000351487 TPH2Q8IWU9 490 aa24.23■■□□□ 1.47
UPF3A-201ENST00000351487 INPP4AQ96PE3 977 aaPredicted RBP24.23■■□□□ 1.47
UPF3A-201ENST00000351487 KCND2Q9NZV8 630 aa24.23■■□□□ 1.47
UPF3A-201ENST00000351487 ZNF70Q9UC06 446 aaPredicted RBP24.23■■□□□ 1.47
UPF3A-201ENST00000351487 NENFQ9UMX5 172 aa24.23■■□□□ 1.47
UPF3A-201ENST00000351487 MRPL11Q9Y3B7 192 aaKnown RBP24.23■■□□□ 1.47
UPF3A-201ENST00000351487 CNTNAP1P78357 1384 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 FTCDO95954 541 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 POLD1P28340 1107 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 CEP55Q53EZ4 464 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 GOLGA5Q8TBA6 731 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 GDAP1L1Q96MZ0 367 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 MKNK1Q9BUB5 465 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 PARVGQ9HBI0 331 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 GCNT4Q9P109 453 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 GAS7O60861 476 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 MATR3P43243 847 aaKnown RBP eCLIP24.22■■□□□ 1.47
UPF3A-201ENST00000351487 EPHB4P54760 987 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 SETQ01105 290 aaPredicted RBP24.22■■□□□ 1.47
UPF3A-201ENST00000351487 ENOX2Q16206 610 aaKnown RBP24.22■■□□□ 1.47
UPF3A-201ENST00000351487 TCERG1LQ5VWI1 586 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 EMBQ6PCB8 327 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 CCDC174Q6PII3 467 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 MS4A14Q96JA4 679 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 FIZ1Q96SL8 496 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 WDR11Q9BZH6 1224 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 VCPKMTQ9H867 229 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 FAM204AQ9H8W3 233 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 NAGPAQ9UK23 515 aa24.22■■□□□ 1.47
UPF3A-201ENST00000351487 SHTN1A0MZ66 631 aa24.21■■□□□ 1.47
UPF3A-201ENST00000351487 AGPSO00116 658 aa24.21■■□□□ 1.47
UPF3A-201ENST00000351487 CES2O00748 559 aa24.21■■□□□ 1.47
UPF3A-201ENST00000351487 CLIC2O15247 247 aa24.21■■□□□ 1.47
UPF3A-201ENST00000351487 FAM160B2Q86V87 743 aa24.21■■□□□ 1.47
UPF3A-201ENST00000351487 MYCT1Q8N699 235 aa24.21■■□□□ 1.47
UPF3A-201ENST00000351487 ZBTB9Q96C00 473 aa24.21■■□□□ 1.47
UPF3A-201ENST00000351487 GMLQ99445 158 aa24.21■■□□□ 1.47
UPF3A-201ENST00000351487 CLRN2A0PK11 232 aa24.2■■□□□ 1.47
UPF3A-201ENST00000351487 CHMP2AO43633 222 aa24.2■■□□□ 1.47
UPF3A-201ENST00000351487 ACTN2P35609 894 aa24.2■■□□□ 1.47
UPF3A-201ENST00000351487 ZSCAN26Q16670 478 aa24.2■■□□□ 1.47
UPF3A-201ENST00000351487 B3GNT9Q6UX72 402 aa24.2■■□□□ 1.47
UPF3A-201ENST00000351487 DEFB129Q9H1M3 183 aa24.2■■□□□ 1.47
UPF3A-201ENST00000351487 ODF2LQ9ULJ1 636 aa24.2■■□□□ 1.47
UPF3A-201ENST00000351487 SFI1A8K8P3 1242 aa24.2■■□□□ 1.46
UPF3A-201ENST00000351487 NMT1P30419 496 aaKnown RBP24.2■■□□□ 1.46
UPF3A-201ENST00000351487 PSMC2P35998 433 aaKnown RBP24.2■■□□□ 1.46
UPF3A-201ENST00000351487 GGCXP38435 758 aa24.2■■□□□ 1.46
UPF3A-201ENST00000351487 SLC7A5Q01650 507 aa24.2■■□□□ 1.46
UPF3A-201ENST00000351487 SPDYE2Q495Y8 402 aa24.2■■□□□ 1.46
UPF3A-201ENST00000351487 SLC30A10Q6XR72 485 aa24.2■■□□□ 1.46
UPF3A-201ENST00000351487 NACC1Q96RE7 527 aa24.2■■□□□ 1.46
UPF3A-201ENST00000351487 POLD4Q9HCU8 107 aa24.2■■□□□ 1.46
UPF3A-201ENST00000351487 AJAP1Q9UKB5 411 aaPredicted RBP24.2■■□□□ 1.46
UPF3A-201ENST00000351487 PCDHB13Q9Y5F0 798 aa24.2■■□□□ 1.46
UPF3A-201ENST00000351487 TBC1D12O60347 775 aa24.19■■□□□ 1.46
UPF3A-201ENST00000351487 RPS6KA5O75582 802 aa24.19■■□□□ 1.46
UPF3A-201ENST00000351487 FLOT1O75955 427 aa24.19■■□□□ 1.46
UPF3A-201ENST00000351487 CAPN2P17655 700 aa24.19■■□□□ 1.46
UPF3A-201ENST00000351487 SND1Q7KZF4 910 aaKnown RBP eCLIP24.19■■□□□ 1.46
UPF3A-201ENST00000351487 FAM186BQ8IYM0 893 aa24.19■■□□□ 1.46
UPF3A-201ENST00000351487 CAVIN3Q969G5 261 aa24.19■■□□□ 1.46
UPF3A-201ENST00000351487 GOLGA6BA6NDN3 693 aa24.19■■□□□ 1.46
UPF3A-201ENST00000351487 PPP1R12BO60237 982 aaPredicted RBP24.19■■□□□ 1.46
UPF3A-201ENST00000351487 DLGAP5Q15398 846 aa24.19■■□□□ 1.46
UPF3A-201ENST00000351487 IFI16Q16666 785 aaKnown RBP24.19■■□□□ 1.46
UPF3A-201ENST00000351487 GRIPAP1Q4V328 841 aa24.19■■□□□ 1.46
UPF3A-201ENST00000351487 FKBP1CQ5VVH2 108 aa24.19■■□□□ 1.46
UPF3A-201ENST00000351487 ALKBH5Q6P6C2 394 aaKnown RBP24.19■■□□□ 1.46
UPF3A-201ENST00000351487 STXBP4Q6ZWJ1 553 aa24.18■■□□□ 1.46
UPF3A-201ENST00000351487 ZNF720Q7Z2F6 126 aa24.18■■□□□ 1.46
UPF3A-201ENST00000351487 AFAP1L1Q8TED9 768 aa24.18■■□□□ 1.46
UPF3A-201ENST00000351487 ZNF577Q9BSK1 485 aa24.18■■□□□ 1.46
UPF3A-201ENST00000351487 UNC45AQ9H3U1 944 aa24.18■■□□□ 1.46
UPF3A-201ENST00000351487 ZBTB39O15060 712 aa24.18■■□□□ 1.46
UPF3A-201ENST00000351487 C21orf2O43822 256 aa24.18■■□□□ 1.46
UPF3A-201ENST00000351487 ZC2HC1CQ53FD0 456 aaPredicted RBP24.18■■□□□ 1.46
UPF3A-201ENST00000351487 VPS36Q86VN1 386 aa24.18■■□□□ 1.46
UPF3A-201ENST00000351487 LRRC57Q8N9N7 239 aa24.18■■□□□ 1.46
UPF3A-201ENST00000351487 GDF3Q9NR23 364 aa24.18■■□□□ 1.46
UPF3A-201ENST00000351487 WRAP73Q9P2S5 460 aaPredicted RBP24.18■■□□□ 1.46
UPF3A-201ENST00000351487 FEM1BQ9UK73 627 aa24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms