RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 GGA1Q9UJY5 639 aa18.8■□□□□ 0.6
SMAD4-201ENST00000342988 ZNF215Q9UL58 517 aaPredicted RBP18.8■□□□□ 0.6
SMAD4-201ENST00000342988 CCDC22O60826 627 aa18.8■□□□□ 0.6
SMAD4-201ENST00000342988 SLFNL1Q499Z3 407 aa18.8■□□□□ 0.6
SMAD4-201ENST00000342988 DCAF15Q66K64 600 aa18.8■□□□□ 0.6
SMAD4-201ENST00000342988 CAPRIN2Q6IMN6 1127 aaKnown RBP18.8■□□□□ 0.6
SMAD4-201ENST00000342988 AATFQ9NY61 560 aaKnown RBP eCLIP18.8■□□□□ 0.6
SMAD4-201ENST00000342988 IKBIPQ70UQ0 350 aa18.8■□□□□ 0.6
SMAD4-201ENST00000342988 CLEC4MQ9H2X3 399 aaPredicted RBP18.8■□□□□ 0.6
SMAD4-201ENST00000342988 RSPH10B2B2RC85 870 aa18.8■□□□□ 0.6
SMAD4-201ENST00000342988 RSPH10BP0C881 870 aa18.8■□□□□ 0.6
SMAD4-201ENST00000342988 FAM45BPQ6NSW5 357 aa18.8■□□□□ 0.6
SMAD4-201ENST00000342988 LMBR1LQ6UX01 489 aa18.8■□□□□ 0.6
SMAD4-201ENST00000342988 TUFT1Q9NNX1 390 aa18.8■□□□□ 0.6
SMAD4-201ENST00000342988 PLTPP55058 493 aa18.8■□□□□ 0.6
SMAD4-201ENST00000342988 DR1Q01658 176 aa18.8■□□□□ 0.6
SMAD4-201ENST00000342988 MICALL2Q8IY33 904 aa18.8■□□□□ 0.6
SMAD4-201ENST00000342988 CYLC2Q14093 348 aaPredicted RBP18.8■□□□□ 0.6
SMAD4-201ENST00000342988 PHKG1Q16816 387 aa18.8■□□□□ 0.6
SMAD4-201ENST00000342988 SMARCAL1Q9NZC9 954 aa18.8■□□□□ 0.6
SMAD4-201ENST00000342988 TFCP2L1Q9NZI6 479 aa18.8■□□□□ 0.6
SMAD4-201ENST00000342988 MAGED2Q9UNF1 606 aaPredicted RBP18.8■□□□□ 0.6
SMAD4-201ENST00000342988 MORC2Q9Y6X9 1032 aaPredicted RBP18.8■□□□□ 0.6
SMAD4-201ENST00000342988 SAC3D1A6NKF1 404 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 IRS4O14654 1257 aaPredicted RBP18.79■□□□□ 0.6
SMAD4-201ENST00000342988 CNBD1Q8NA66 436 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 FAM149B1Q96BN6 582 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 SPDYE5A6NIY4 337 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 ADAM9Q13443 819 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 SPDYE7PQ495Y7 208 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 C11orf88Q6PI97 169 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 ZNF467Q7Z7K2 595 aaPredicted RBP18.79■□□□□ 0.6
SMAD4-201ENST00000342988 EPS8L2Q9H6S3 715 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 AOX1Q06278 1338 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 MSH6P52701 1360 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 TBC1D10BQ4KMP7 808 aaPredicted RBP18.79■□□□□ 0.6
SMAD4-201ENST00000342988 PPP1R13BQ96KQ4 1090 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 TRIM62Q9BVG3 475 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 PSTPIP2Q9H939 334 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 KIAA1468Q9P260 1216 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 STXBP3O00186 592 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 POLR2MP0CAP2 368 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 PSMC2P35998 433 aaKnown RBP18.79■□□□□ 0.6
SMAD4-201ENST00000342988 HSPA9P38646 679 aaKnown RBP18.79■□□□□ 0.6
SMAD4-201ENST00000342988 CUL3Q13618 768 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 IYDQ6PHW0 289 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 SCFD1Q8WVM8 642 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 UTP6Q9NYH9 597 aaKnown RBP18.79■□□□□ 0.6
SMAD4-201ENST00000342988 MYH3P11055 1940 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 PNOCQ13519 176 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 NSMFQ6X4W1 530 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 ERICH1Q86X53 443 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 COG1Q8WTW3 980 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 CASS4Q9NQ75 786 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 SCN3BQ9NY72 215 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 CFTRP13569 1480 aa18.79■□□□□ 0.6
SMAD4-201ENST00000342988 CDC25BP30305 580 aa18.78■□□□□ 0.6
SMAD4-201ENST00000342988 QKIQ96PU8 341 aaKnown RBP eCLIP18.78■□□□□ 0.62e-6■■■■□ 21.8
SMAD4-201ENST00000342988 CUL7Q14999 1698 aa18.78■□□□□ 0.6
SMAD4-201ENST00000342988 M0R3G1 203 aa18.78■□□□□ 0.6
SMAD4-201ENST00000342988 COBLO75128 1261 aa18.78■□□□□ 0.6
SMAD4-201ENST00000342988 ODR4Q5SWX8 454 aa18.78■□□□□ 0.6
SMAD4-201ENST00000342988 THOC7Q6I9Y2 204 aaKnown RBP18.78■□□□□ 0.6
SMAD4-201ENST00000342988 RWDD4Q6NW29 188 aaKnown RBP18.78■□□□□ 0.6
SMAD4-201ENST00000342988 PRPF18Q99633 342 aaKnown RBP18.78■□□□□ 0.6
SMAD4-201ENST00000342988 KRT78Q8N1N4 520 aa18.78■□□□□ 0.6
SMAD4-201ENST00000342988 TINF2Q9BSI4 451 aa18.78■□□□□ 0.6
SMAD4-201ENST00000342988 INTS13Q9NVM9 706 aa18.78■□□□□ 0.6
SMAD4-201ENST00000342988 GCNT4Q9P109 453 aa18.78■□□□□ 0.6
SMAD4-201ENST00000342988 ZNF197O14709 1029 aa18.78■□□□□ 0.6
SMAD4-201ENST00000342988 SHROOM1Q2M3G4 852 aaPredicted RBP18.78■□□□□ 0.6
SMAD4-201ENST00000342988 TIAM1Q13009 1591 aa18.78■□□□□ 0.6
SMAD4-201ENST00000342988 ANGPT2O15123 496 aa18.78■□□□□ 0.6
SMAD4-201ENST00000342988 KLHL38Q2WGJ6 581 aa18.78■□□□□ 0.6
SMAD4-201ENST00000342988 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.78■□□□□ 0.6
SMAD4-201ENST00000342988 CYTH3O43739 400 aa18.78■□□□□ 0.6
SMAD4-201ENST00000342988 UBAP1Q9NZ09 502 aa18.78■□□□□ 0.6
SMAD4-201ENST00000342988 hCG_2014768A0A024R1R8 64 aa18.78■□□□□ 0.6
SMAD4-201ENST00000342988 UBAP1LF5GYI3 381 aa18.78■□□□□ 0.6
SMAD4-201ENST00000342988 MMRN1Q13201 1228 aa18.78■□□□□ 0.6
SMAD4-201ENST00000342988 BICC1Q9H694 974 aaKnown RBP18.78■□□□□ 0.6
SMAD4-201ENST00000342988 SUGCTQ9HAC7 445 aa18.77■□□□□ 0.6
SMAD4-201ENST00000342988 MOSPD1Q9UJG1 213 aa18.77■□□□□ 0.6
SMAD4-201ENST00000342988 TTC30AQ86WT1 665 aa18.77■□□□□ 0.6
SMAD4-201ENST00000342988 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.77■□□□□ 0.6
SMAD4-201ENST00000342988 SEPT9Q9UHD8 586 aaPredicted RBP18.77■□□□□ 0.6
SMAD4-201ENST00000342988 ARMCX4Q5H9R4 360 aa18.77■□□□□ 0.6
SMAD4-201ENST00000342988 MIS18BP1Q6P0N0 1132 aa18.77■□□□□ 0.6
SMAD4-201ENST00000342988 UHMK1Q8TAS1 419 aaKnown RBP18.77■□□□□ 0.6
SMAD4-201ENST00000342988 PSD3Q9NYI0 1048 aa18.77■□□□□ 0.6
SMAD4-201ENST00000342988 UFL1O94874 794 aa18.77■□□□□ 0.6
SMAD4-201ENST00000342988 SH3BP5LQ7L8J4 393 aa18.77■□□□□ 0.6
SMAD4-201ENST00000342988 TEX2Q8IWB9 1127 aa18.77■□□□□ 0.6
SMAD4-201ENST00000342988 NNTQ13423 1086 aa18.77■□□□□ 0.6
SMAD4-201ENST00000342988 SREK1IP1Q8N9Q2 155 aaPredicted RBP18.77■□□□□ 0.6
SMAD4-201ENST00000342988 VIPAS39Q9H9C1 493 aa18.77■□□□□ 0.6
SMAD4-201ENST00000342988 ARL4CP56559 192 aa18.77■□□□□ 0.59
SMAD4-201ENST00000342988 CUL4AQ13619 759 aa18.77■□□□□ 0.59
SMAD4-201ENST00000342988 DIS3L2Q8IYB7 885 aaKnown RBP18.77■□□□□ 0.59
SMAD4-201ENST00000342988 CDC23Q9UJX2 597 aa18.77■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms