RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 SPATA31A7Q8IWB4 1347 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 LMO7Q8WWI1 1683 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 PPP1R11O60927 126 aaPredicted RBP12.98□□□□□ -0.33
USP1-201ENST00000339950 PPFIA4O75335 1185 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 BBOX1O75936 387 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 AKAP3O75969 853 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 SOX10P56693 466 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 DGKZQ13574 1117 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 SMAD1Q15797 465 aaKnown RBP12.98□□□□□ -0.33
USP1-201ENST00000339950 XKR9Q5GH70 373 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 MIER3Q7Z3K6 550 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 HNRNPLLQ8WVV9 542 aaKnown RBP12.98□□□□□ -0.33
USP1-201ENST00000339950 RPGRIP1Q96KN7 1286 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 RAB21Q9UL25 225 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 GINS2Q9Y248 185 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 TUBGCP6Q96RT7 1819 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 MAGOHP61326 146 aaKnown RBP12.98□□□□□ -0.33
USP1-201ENST00000339950 SYDE2Q5VT97 1194 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 HAUS1Q96CS2 278 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 RNPC3Q96LT9 517 aaKnown RBP12.98□□□□□ -0.33
USP1-201ENST00000339950 BAIAP2L1Q9UHR4 511 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 SYF2O95926 243 aaKnown RBP12.98□□□□□ -0.33
USP1-201ENST00000339950 CALRP27797 417 aaKnown RBP12.98□□□□□ -0.33
USP1-201ENST00000339950 ERFP50548 548 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 PEX3P56589 373 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 AMPD2Q01433 879 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 KCNMA1Q12791 1236 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 KNOP1Q1ED39 458 aaKnown RBP12.98□□□□□ -0.33
USP1-201ENST00000339950 CCDC26Q8TAB7 109 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 EIF2AK1Q9BQI3 630 aaKnown RBP12.98□□□□□ -0.33
USP1-201ENST00000339950 GPRC5CQ9NQ84 441 aa12.98□□□□□ -0.33
USP1-201ENST00000339950 NOC2LQ9Y3T9 749 aaKnown RBP12.98□□□□□ -0.33
USP1-201ENST00000339950 RBAK-RBAKDNI3L0D1 243 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 MYO1FO00160 1098 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 NEBLO76041 1014 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 UAP1Q16222 522 aaPredicted RBP12.97□□□□□ -0.33
USP1-201ENST00000339950 SYCP2LQ5T4T6 812 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 KLHDC7AQ5VTJ3 777 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 ZNF571Q7Z3V5 609 aaPredicted RBP12.97□□□□□ -0.33
USP1-201ENST00000339950 CASKIN2Q8WXE0 1202 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 HAS1Q92839 578 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 CEP72Q9P209 647 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 KIF13AQ9H1H9 1805 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 PVALEFA0A1B0GWK0 134 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 PHF20L1A8MW92 1017 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 PPP1R2P41236 205 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 GALCP54803 685 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 HDLBPQ00341 1268 aaKnown RBP12.97□□□□□ -0.33
USP1-201ENST00000339950 KLHL11Q9NVR0 708 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 CCPG1Q9ULG6 757 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 STK38LQ9Y2H1 464 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 KDM3AQ9Y4C1 1321 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 H0YIN7 160 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 PGRMC1O00264 195 aaKnown RBP12.97□□□□□ -0.33
USP1-201ENST00000339950 SLC16A4O15374 487 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 CTNNA2P26232 953 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 RHBDL3P58872 404 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 DLGAP5Q15398 846 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 CYP4F22Q6NT55 531 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 GDAP1Q8TB36 358 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 LMBR1Q8WVP7 490 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 ERGIC2Q96RQ1 377 aa12.97□□□□□ -0.33
USP1-201ENST00000339950 RASSF10A6NK89 507 aa12.96□□□□□ -0.33
USP1-201ENST00000339950 GYS1P13807 737 aa12.96□□□□□ -0.33
USP1-201ENST00000339950 EZRP15311 586 aaKnown RBP12.96□□□□□ -0.33
USP1-201ENST00000339950 MYL7Q01449 175 aa12.96□□□□□ -0.33
USP1-201ENST00000339950 FAM133BQ5BKY9 247 aaKnown RBP12.96□□□□□ -0.33
USP1-201ENST00000339950 PI4KBQ9UBF8 816 aa12.96□□□□□ -0.33
USP1-201ENST00000339950 FAM86B1E9PN63 330 aa12.96□□□□□ -0.33
USP1-201ENST00000339950 EML1O00423 815 aa12.96□□□□□ -0.33
USP1-201ENST00000339950 EVI5O60447 810 aa12.96□□□□□ -0.33
USP1-201ENST00000339950 CTNND1O60716 968 aaKnown RBP12.96□□□□□ -0.33
USP1-201ENST00000339950 FAM86B2P0C5J1 330 aa12.96□□□□□ -0.33
USP1-201ENST00000339950 POLR2MP0CAP2 368 aa12.96□□□□□ -0.33
USP1-201ENST00000339950 TNNI1P19237 187 aa12.96□□□□□ -0.33
USP1-201ENST00000339950 PRPHP41219 470 aa12.96□□□□□ -0.33
USP1-201ENST00000339950 NPEPPSP55786 919 aa12.96□□□□□ -0.33
USP1-201ENST00000339950 POP1Q99575 1024 aaKnown RBP12.96□□□□□ -0.33
USP1-201ENST00000339950 CLNS1AP54105 237 aaKnown RBP12.96□□□□□ -0.33
USP1-201ENST00000339950 SLC18A3Q16572 532 aa12.96□□□□□ -0.33
USP1-201ENST00000339950 PURBQ96QR8 312 aaKnown RBP12.96□□□□□ -0.33
USP1-201ENST00000339950 PI4K2AQ9BTU6 479 aa12.96□□□□□ -0.33
USP1-201ENST00000339950 KCPQ6ZWJ8 1503 aa12.96□□□□□ -0.34
USP1-201ENST00000339950 KDM4FA0A1W2PPD8 638 aa12.96□□□□□ -0.34
USP1-201ENST00000339950 CLTAP09496 248 aa12.96□□□□□ -0.34
USP1-201ENST00000339950 FGFR4P22455 802 aa12.96□□□□□ -0.34
USP1-201ENST00000339950 TM4SF1P30408 202 aa12.96□□□□□ -0.34
USP1-201ENST00000339950 OSTNP61366 133 aa12.96□□□□□ -0.34
USP1-201ENST00000339950 SEPT7Q16181 437 aaKnown RBP12.96□□□□□ -0.34
USP1-201ENST00000339950 PAPD7Q5XG87 772 aaKnown RBP12.96□□□□□ -0.34
USP1-201ENST00000339950 METTL13Q8N6R0 699 aa12.96□□□□□ -0.34
USP1-201ENST00000339950 C1orf54Q8WWF1 131 aa12.96□□□□□ -0.34
USP1-201ENST00000339950 PARVGQ9HBI0 331 aa12.96□□□□□ -0.34
USP1-201ENST00000339950 A0A1W2PRG0 241 aa12.95□□□□□ -0.34
USP1-201ENST00000339950 KIF4AO95239 1232 aa12.95□□□□□ -0.34
USP1-201ENST00000339950 DAB2IPQ5VWQ8 1189 aa12.95□□□□□ -0.34
USP1-201ENST00000339950 PLA2G4FQ68DD2 849 aa12.95□□□□□ -0.34
USP1-201ENST00000339950 CYFIP1Q7L576 1253 aa12.95□□□□□ -0.34
USP1-201ENST00000339950 TCP11Q8WWU5 503 aa12.95□□□□□ -0.34
USP1-201ENST00000339950 RAVER2Q9HCJ3 691 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 763.9 ms