RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PPP6R2O75170 966 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 LZICQ8WZA0 190 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 BHMT2Q9H2M3 363 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.53□□□□□ -0.24
SDC3-201ENST00000336798 ABCB11O95342 1321 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 MMP1P03956 469 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 ADD2P35612 726 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 POU5F1BQ06416 359 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 FAM83BQ5T0W9 1011 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 ZMYM4Q5VZL5 1548 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 PLEKHA8P1O95397 391 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 SYF2O95926 243 aaKnown RBP13.53□□□□□ -0.24
SDC3-201ENST00000336798 CA4P22748 312 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 CIITAP33076 1130 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 FKBP3Q00688 224 aaKnown RBP13.53□□□□□ -0.24
SDC3-201ENST00000336798 ZC3H12BQ5HYM0 836 aaKnown RBP13.53□□□□□ -0.24
SDC3-201ENST00000336798 RNF26Q9BY78 433 aaPredicted RBP13.53□□□□□ -0.24
SDC3-201ENST00000336798 MED4Q9NPJ6 270 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 PI4KBQ9UBF8 816 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 TTC7AQ9ULT0 858 aaPredicted RBP13.53□□□□□ -0.24
SDC3-201ENST00000336798 TMEM247A6NEH6 219 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 RASGRF2O14827 1237 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 HSPA6P17066 643 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 TAF11Q15544 211 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 HSP90AA5PQ58FG0 334 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 TRPC5Q9UL62 973 aaPredicted RBP13.53□□□□□ -0.24
SDC3-201ENST00000336798 CFAP69A5D8W1 941 aa13.52□□□□□ -0.24
SDC3-201ENST00000336798 GH2P01242 217 aa13.52□□□□□ -0.24
SDC3-201ENST00000336798 CDK8P49336 464 aa13.52□□□□□ -0.24
SDC3-201ENST00000336798 SH3BGRP55822 239 aaPredicted RBP13.52□□□□□ -0.24
SDC3-201ENST00000336798 DAB2P98082 770 aa13.52□□□□□ -0.24
SDC3-201ENST00000336798 CIAPIN1Q6FI81 312 aa13.52□□□□□ -0.24
SDC3-201ENST00000336798 SPATS2Q86XZ4 545 aaKnown RBP13.52□□□□□ -0.24
SDC3-201ENST00000336798 NSUN7Q8NE18 718 aaKnown RBP13.52□□□□□ -0.24
SDC3-201ENST00000336798 ZSWIM5Q9P217 1185 aa13.52□□□□□ -0.24
SDC3-201ENST00000336798 PIK3R2O00459 728 aa13.52□□□□□ -0.24
SDC3-201ENST00000336798 SERPING1P05155 500 aa13.52□□□□□ -0.24
SDC3-201ENST00000336798 ZNF507Q8TCN5 953 aa13.52□□□□□ -0.24
SDC3-201ENST00000336798 ZMYND12Q9H0C1 365 aa13.52□□□□□ -0.24
SDC3-201ENST00000336798 NEUROG2Q9H2A3 272 aa13.52□□□□□ -0.24
SDC3-201ENST00000336798 MAGEF1Q9HAY2 307 aa13.52□□□□□ -0.24
SDC3-201ENST00000336798 MLXIPLQ9NP71 852 aa13.52□□□□□ -0.24
SDC3-201ENST00000336798 SLFNL1Q499Z3 407 aa13.52□□□□□ -0.25
SDC3-201ENST00000336798 ZNF772Q68DY9 489 aaPredicted RBP13.52□□□□□ -0.25
SDC3-201ENST00000336798 SH3RF3Q8TEJ3 882 aaPredicted RBP13.52□□□□□ -0.25
SDC3-201ENST00000336798 VPS11Q9H270 941 aa13.52□□□□□ -0.25
SDC3-201ENST00000336798 FBXL5Q9UKA1 691 aa13.52□□□□□ -0.25
SDC3-201ENST00000336798 PACSIN2Q9UNF0 486 aaPredicted RBP13.52□□□□□ -0.25
SDC3-201ENST00000336798 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.52□□□□□ -0.25
SDC3-201ENST00000336798 AK8Q96MA6 479 aa13.52□□□□□ -0.25
SDC3-201ENST00000336798 CUEDC2Q9H467 287 aa13.52□□□□□ -0.25
SDC3-201ENST00000336798 SASH1O94885 1247 aa13.52□□□□□ -0.25
SDC3-201ENST00000336798 SLC9A5Q14940 896 aa13.52□□□□□ -0.25
SDC3-201ENST00000336798 SH3KBP1Q96B97 665 aa13.52□□□□□ -0.25
SDC3-201ENST00000336798 PAGE5Q96GU1 130 aa13.52□□□□□ -0.25
SDC3-201ENST00000336798 CDHR1Q96JP9 859 aa13.52□□□□□ -0.25
SDC3-201ENST00000336798 ZBTB18Q99592 522 aa13.52□□□□□ -0.25
SDC3-201ENST00000336798 GTPBP10A4D1E9 387 aaKnown RBP13.51□□□□□ -0.25
SDC3-201ENST00000336798 TAC1P20366 129 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 PTK2BQ14289 1009 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 GIPC2Q8TF65 315 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 PCSK1NQ9UHG2 260 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 HPCAL4Q9UM19 191 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 EIF4E1BA6NMX2 242 aaKnown RBP13.51□□□□□ -0.25
SDC3-201ENST00000336798 CYP2D6P10635 497 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 ADORA2BP29275 332 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 CASP1P29466 404 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 TMPRSS15P98073 1019 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 RBBP7Q16576 425 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 CENPUQ71F23 418 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 RHPN2Q8IUC4 686 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 NDUFAF2Q8N183 169 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 SH3GL3Q99963 347 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 YIPF2Q9BWQ6 316 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 HPS4Q9NQG7 708 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 IQANK1A0A1B0GTG1 560 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 ZSCAN9O15535 394 aaPredicted RBP13.51□□□□□ -0.25
SDC3-201ENST00000336798 PRPF4O43172 522 aaKnown RBP eCLIP13.51□□□□□ -0.25
SDC3-201ENST00000336798 CCDC85BQ15834 202 aaPredicted RBP13.51□□□□□ -0.25
SDC3-201ENST00000336798 TAF1BQ53T94 588 aaPredicted RBP13.51□□□□□ -0.25
SDC3-201ENST00000336798 PPP1R36Q96LQ0 422 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 TSC22D3Q99576 134 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 TRPV6Q9H1D0 765 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 NFU1Q9UMS0 254 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 MLH3Q9UHC1 1453 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 FGGP02679 453 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 ZNF667Q5HYK9 610 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 KIAA1755Q5JYT7 1200 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 AGR3Q8TD06 166 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 DHX38Q92620 1227 aaKnown RBP13.51□□□□□ -0.25
SDC3-201ENST00000336798 FAM213AQ9BRX8 229 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 ANAPC7Q9UJX3 599 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 PAMP19021 973 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 TAGAPQ8N103 731 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 L3MBTL1Q9Y468 752 aa13.51□□□□□ -0.25
SDC3-201ENST00000336798 E5RI56 91 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 PPARGP37231 505 aaPredicted RBP13.5□□□□□ -0.25
SDC3-201ENST00000336798 KIF23Q02241 960 aaPredicted RBP13.5□□□□□ -0.25
SDC3-201ENST00000336798 AP1B1Q10567 949 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 SYCP2LQ5T4T6 812 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms