RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 SMAD3P84022 425 aaKnown RBP15.72■□□□□ 0.11
LIMS1-201ENST00000332345 SPIRE1Q08AE8 756 aa15.72■□□□□ 0.11
LIMS1-201ENST00000332345 IKBKEQ14164 716 aa15.72■□□□□ 0.11
LIMS1-201ENST00000332345 OTUD6AQ7L8S5 288 aa15.72■□□□□ 0.11
LIMS1-201ENST00000332345 METTL13Q8N6R0 699 aa15.72■□□□□ 0.11
LIMS1-201ENST00000332345 ZBTB10Q96DT7 871 aa15.72■□□□□ 0.11
LIMS1-201ENST00000332345 ZSWIM4Q9H7M6 989 aa15.72■□□□□ 0.11
LIMS1-201ENST00000332345 ABHD14A-ACY1A0A1B0GW23 586 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 LAD1O00515 517 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 SOX1O00570 391 aaPredicted RBP15.71■□□□□ 0.11
LIMS1-201ENST00000332345 C22orf31O95567 290 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 OR52Z1P0C646 297 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 TECP42680 631 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 TBC1D8BQ0IIM8 1120 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 MBTPS1Q14703 1052 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 TMEM266Q2M3C6 531 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 EFCAB12Q6NXP0 572 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 TPH2Q8IWU9 490 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 C4orf19Q8IY42 314 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 EXOC8Q8IYI6 725 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 KIAA0319LQ8IZA0 1049 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 ZNF710Q8N1W2 664 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 NEK9Q8TD19 979 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 SEPT8Q92599 483 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 LRCH3Q96II8 777 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 DYDC2Q96IM9 177 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 EIF2AK1Q9BQI3 630 aaKnown RBP15.71■□□□□ 0.11
LIMS1-201ENST00000332345 RGL1Q9NZL6 768 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 CXXC1Q9P0U4 656 aaPredicted RBP15.71■□□□□ 0.11
LIMS1-201ENST00000332345 SEPT9Q9UHD8 586 aaPredicted RBP15.71■□□□□ 0.11
LIMS1-201ENST00000332345 CDY2AQ9Y6F7 541 aa15.71■□□□□ 0.11
LIMS1-201ENST00000332345 LAMA2P24043 3122 aaKnown RBP15.7■□□□□ 0.1
LIMS1-201ENST00000332345 SLITRK3O94933 977 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 STBD1O95210 358 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 HSP90AA1P07900 732 aaKnown RBP15.7■□□□□ 0.1
LIMS1-201ENST00000332345 KCNJ6P48051 423 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 DNM2P50570 870 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 MGAT3Q09327 533 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 PTGDRQ13258 359 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 TARBP2Q15633 366 aaKnown RBP15.7■□□□□ 0.1
LIMS1-201ENST00000332345 MTERF2Q49AM1 385 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 PLEKHG4Q58EX7 1191 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 BRAPQ7Z569 592 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 C4orf32Q8N8J7 132 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 USP38Q8NB14 1042 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 DBF4BQ8NFT6 615 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 ERMNQ8TAM6 284 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 PHOSPHO2Q8TCD6 241 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 APBB2Q92870 758 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 HSD17B14Q9BPX1 270 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 JPH2Q9BR39 696 aaPredicted RBP15.7■□□□□ 0.1
LIMS1-201ENST00000332345 LXNQ9BS40 222 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 CELF4Q9BZC1 486 aaKnown RBP15.7■□□□□ 0.1
LIMS1-201ENST00000332345 PPME1Q9Y570 386 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 PCDHB6Q9Y5E3 794 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 TRPV2Q9Y5S1 764 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 SQORQ9Y6N5 450 aa15.7■□□□□ 0.1
LIMS1-201ENST00000332345 VPS37CA5D8V6 355 aaPredicted RBP15.69■□□□□ 0.1
LIMS1-201ENST00000332345 ATP2A2P16615 1042 aaKnown RBP15.69■□□□□ 0.1
LIMS1-201ENST00000332345 SYT1P21579 422 aa15.69■□□□□ 0.1
LIMS1-201ENST00000332345 CDC42EP1Q00587 391 aa15.69■□□□□ 0.1
LIMS1-201ENST00000332345 CYP4A11Q02928 519 aa15.69■□□□□ 0.1
LIMS1-201ENST00000332345 TMEM62Q0P6H9 643 aa15.69■□□□□ 0.1
LIMS1-201ENST00000332345 CTTNQ14247 550 aaKnown RBP15.69■□□□□ 0.1
LIMS1-201ENST00000332345 PDIA5Q14554 519 aa15.69■□□□□ 0.1
LIMS1-201ENST00000332345 NBR1Q14596 966 aa15.69■□□□□ 0.1
LIMS1-201ENST00000332345 ANO5Q75V66 913 aa15.69■□□□□ 0.1
LIMS1-201ENST00000332345 MAP7D2Q96T17 732 aa15.69■□□□□ 0.1
LIMS1-201ENST00000332345 IFIH1Q9BYX4 1025 aaKnown RBP15.69■□□□□ 0.1
LIMS1-201ENST00000332345 RAB34Q9BZG1 259 aa15.69■□□□□ 0.1
LIMS1-201ENST00000332345 SUGCTQ9HAC7 445 aa15.69■□□□□ 0.1
LIMS1-201ENST00000332345 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.69■□□□□ 0.1
LIMS1-201ENST00000332345 STK24Q9Y6E0 443 aa15.69■□□□□ 0.1
LIMS1-201ENST00000332345 LYPLA2O95372 231 aa15.68■□□□□ 0.1
LIMS1-201ENST00000332345 XRCC6P12956 609 aaKnown RBP eCLIP15.68■□□□□ 0.1
LIMS1-201ENST00000332345 PDIA4P13667 645 aaKnown RBP15.68■□□□□ 0.1
LIMS1-201ENST00000332345 YWHABP31946 246 aaKnown RBP15.68■□□□□ 0.1
LIMS1-201ENST00000332345 FXR2P51116 673 aaKnown RBP eCLIP15.68■□□□□ 0.1
LIMS1-201ENST00000332345 FBXO47Q5MNV8 452 aa15.68■□□□□ 0.1
LIMS1-201ENST00000332345 ODR4Q5SWX8 454 aa15.68■□□□□ 0.1
LIMS1-201ENST00000332345 DTHD1Q6ZMT9 781 aa15.68■□□□□ 0.1
LIMS1-201ENST00000332345 FAM43BQ6ZT52 329 aaPredicted RBP15.68■□□□□ 0.1
LIMS1-201ENST00000332345 CEP170P1Q96L14 293 aa15.68■□□□□ 0.1
LIMS1-201ENST00000332345 SLC9A7Q96T83 725 aa15.68■□□□□ 0.1
LIMS1-201ENST00000332345 CYP26B1Q9NR63 512 aa15.68■□□□□ 0.1
LIMS1-201ENST00000332345 MSRAQ9UJ68 235 aa15.68■□□□□ 0.1
LIMS1-201ENST00000332345 AKT3Q9Y243 479 aa15.68■□□□□ 0.1
LIMS1-201ENST00000332345 SZT2Q5T011 3432 aa15.68■□□□□ 0.1
LIMS1-201ENST00000332345 KDM3AQ9Y4C1 1321 aa15.68■□□□□ 0.1
LIMS1-201ENST00000332345 LOXHD1Q8IVV2 1947 aa15.67■□□□□ 0.1
LIMS1-201ENST00000332345 POTEMA6NI47 508 aa15.67■□□□□ 0.1
LIMS1-201ENST00000332345 MAFO75444 373 aaPredicted RBP15.67■□□□□ 0.1
LIMS1-201ENST00000332345 GHRP10912 638 aa15.67■□□□□ 0.1
LIMS1-201ENST00000332345 PRPHP41219 470 aa15.67■□□□□ 0.1
LIMS1-201ENST00000332345 LPIN1Q14693 890 aa15.67■□□□□ 0.1
LIMS1-201ENST00000332345 RAB30Q15771 203 aa15.67■□□□□ 0.1
LIMS1-201ENST00000332345 FAM109BQ6ICB4 259 aaPredicted RBP15.67■□□□□ 0.1
LIMS1-201ENST00000332345 TSHZ1Q6ZSZ6 1077 aa15.67■□□□□ 0.1
LIMS1-201ENST00000332345 SLC7A3Q8WY07 619 aa15.67■□□□□ 0.1
LIMS1-201ENST00000332345 POLR3CQ9BUI4 534 aaPredicted RBP15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms