RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TRAPPC8Q9Y2L5 1435 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 ARFIP2P53365 341 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 CTSWP56202 376 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 PABPC4Q13310 644 aaKnown RBP eCLIP14.83□□□□□ -0.04
CSPG4-201ENST00000308508 ASPRV1Q53RT3 343 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 ZNF280CQ8ND82 737 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 NACC1Q96RE7 527 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 SH3GL2Q99962 352 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 PALD1Q9ULE6 856 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 PCDHA1Q9Y5I3 950 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 CTTNBP2Q8WZ74 1663 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 GRID2IPA4D2P6 1211 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 PMS2P54278 862 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 CUL3Q13618 768 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 TJAP1Q5JTD0 557 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 EXT2Q93063 718 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 SERPINB4P48594 390 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 SLC7A3Q8WY07 619 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 NDST4Q9H3R1 872 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 LRRC4Q9HBW1 653 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 SAMSN1Q9NSI8 373 aaKnown RBP14.83□□□□□ -0.04
CSPG4-201ENST00000308508 USP40Q9NVE5 1235 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 SEPT3Q9UH03 358 aa14.83□□□□□ -0.04
CSPG4-201ENST00000308508 ARHGEF37A1IGU5 675 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 KLC1Q07866 573 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 ZNF577Q9BSK1 485 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 UHRF1BP1LA0JNW5 1464 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 LRRC47Q8N1G4 583 aaKnown RBP14.82□□□□□ -0.04
CSPG4-201ENST00000308508 PALMO75781 387 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 SURF1Q15526 300 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 DCTN4Q9UJW0 460 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 NEURL1BA8MQ27 555 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 EPHB1P54762 984 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 CERKLQ49MI3 558 aaPredicted RBP14.82□□□□□ -0.04
CSPG4-201ENST00000308508 APOA5Q6Q788 366 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 TAGAPQ8N103 731 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 PI4K2BQ8TCG2 481 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 CYP26B1Q9NR63 512 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 NPC1L1Q9UHC9 1359 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 FOXD4Q12950 439 aaPredicted RBP14.82□□□□□ -0.04
CSPG4-201ENST00000308508 KRT27Q7Z3Y8 459 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 ZNF555Q8NEP9 628 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 ATP6V1G3Q96LB4 118 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 ABCC4O15439 1325 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 ANKRD65E5RJM6 399 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 hCG_1984214I3L0E3 225 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 PSMA2P25787 234 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 LLGL1Q15334 1064 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 ZNF713Q8N859 430 aaPredicted RBP14.82□□□□□ -0.04
CSPG4-201ENST00000308508 TTC8Q8TAM2 541 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 OTUB1Q96FW1 271 aaPredicted RBP14.82□□□□□ -0.04
CSPG4-201ENST00000308508 PARVGQ9HBI0 331 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 RAPGEF6Q8TEU7 1601 aa14.82□□□□□ -0.04
CSPG4-201ENST00000308508 MXI1P50539 228 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 DEFA1P59665 94 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 DEFA3P59666 94 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 HIC1Q14526 733 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 MFSD14BQ5SR56 506 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 GPATCH4Q5T3I0 446 aaKnown RBP14.81□□□□□ -0.04
CSPG4-201ENST00000308508 SZRD1Q7Z422 152 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 PLD3Q8IV08 490 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 SIX6OS1Q8N1H7 587 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 WDR11Q9BZH6 1224 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 ATP6V0A4Q9HBG4 840 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 ANO9A1A5B4 782 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 PIK3R2O00459 728 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 SLC52A2Q9HAB3 445 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 EDC4Q6P2E9 1401 aaKnown RBP14.81□□□□□ -0.04
CSPG4-201ENST00000308508 BLVRAP53004 296 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 KCNA1Q09470 495 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 FAM47CQ5HY64 1035 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 C10orf88Q9H8K7 445 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 SUPT3HO75486 399 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 CCNE1P24864 410 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 ALKBH5Q6P6C2 394 aaKnown RBP14.81□□□□□ -0.04
CSPG4-201ENST00000308508 NDUFAF2Q8N183 169 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 MB21D1Q8N884 522 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 SDR42E1Q8WUS8 393 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 HSPH1Q92598 858 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 PBXIP1Q96AQ6 731 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 DNAJC17Q9NVM6 304 aaKnown RBP14.81□□□□□ -0.04
CSPG4-201ENST00000308508 STMN3Q9NZ72 180 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.81□□□□□ -0.04
CSPG4-201ENST00000308508 LOC102724159A0A0B4J2E5 919 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 PWP2Q15269 919 aaKnown RBP14.81□□□□□ -0.04
CSPG4-201ENST00000308508 DLGAP5Q15398 846 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 PLEKHM3Q6ZWE6 761 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 SSH3Q8TE77 659 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 MORC2Q9Y6X9 1032 aaPredicted RBP14.81□□□□□ -0.04
CSPG4-201ENST00000308508 C16orf96A6NNT2 1141 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 LSG1Q9H089 658 aaKnown RBP14.81□□□□□ -0.04
CSPG4-201ENST00000308508 HACD3Q9P035 362 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 SLC8A2Q9UPR5 921 aa14.81□□□□□ -0.04
CSPG4-201ENST00000308508 HNRNPRO43390 633 aaKnown RBP14.8□□□□□ -0.04
CSPG4-201ENST00000308508 TFAMQ00059 246 aaKnown RBP14.8□□□□□ -0.04
CSPG4-201ENST00000308508 CYLC2Q14093 348 aaPredicted RBP14.8□□□□□ -0.04
CSPG4-201ENST00000308508 KRT33BQ14525 404 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 DEPDC1Q5TB30 811 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 MIS18BP1Q6P0N0 1132 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 SARM1Q6SZW1 724 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms