RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 SP100P23497 879 aaPredicted RBP11.02□□□□□ -0.65
CLDN1-201ENST00000295522 TPP2P29144 1249 aaPredicted RBP11.02□□□□□ -0.65
CLDN1-201ENST00000295522 EPHB2P29323 1055 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 GCLCP48506 637 aaPredicted RBP11.02□□□□□ -0.65
CLDN1-201ENST00000295522 SLC5A9Q2M3M2 681 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 FIGNQ5HY92 759 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 C6orf118Q5T5N4 469 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 NBPF15Q8N660 670 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 KIAA0895Q8NCT3 520 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 SUPT20HQ8NEM7 779 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 LRRC8CQ8TDW0 803 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 RBM41Q96IZ5 413 aaKnown RBP11.02□□□□□ -0.65
CLDN1-201ENST00000295522 NKIRAS1Q9NYS0 192 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 TMOD4Q9NZQ9 345 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 RTCBQ9Y3I0 505 aaKnown RBP11.02□□□□□ -0.65
CLDN1-201ENST00000295522 FAM205AQ6ZU69 1335 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 SLIT1O75093 1534 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 MYH7BA7E2Y1 1941 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 SSU72P8A0A1W2PR75 194 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 CCDC160A6NGH7 325 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 TSPY2A6NKD2 308 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 TLR2O60603 784 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 USP11P51784 963 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 PTK2Q05397 1052 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 EAPPQ56P03 285 aaPredicted RBP11.02□□□□□ -0.65
CLDN1-201ENST00000295522 HGSNATQ68CP4 663 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 BARGINQ6ZT62 677 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 CEP128Q6ZU80 1094 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 PITPNM3Q9BZ71 974 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 UBE2OQ9C0C9 1292 aaKnown RBP11.02□□□□□ -0.65
CLDN1-201ENST00000295522 PABPC3Q9H361 631 aaKnown RBP11.02□□□□□ -0.65
CLDN1-201ENST00000295522 CUEDC2Q9H467 287 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 RNPEPL1Q9HAU8 725 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 RASAL2Q9UJF2 1139 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 AMFRQ9UKV5 643 aa11.02□□□□□ -0.65
CLDN1-201ENST00000295522 CCDC188H7C350 402 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 NVLO15381 856 aaKnown RBP11.01□□□□□ -0.65
CLDN1-201ENST00000295522 CALB2P22676 271 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 VPS36Q86VN1 386 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 SRRM1Q8IYB3 904 aaKnown RBP11.01□□□□□ -0.65
CLDN1-201ENST00000295522 CCDC105Q8IYK2 499 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 KIFAP3Q92845 792 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 RNF25Q96BH1 459 aaPredicted RBP11.01□□□□□ -0.65
CLDN1-201ENST00000295522 CPVLQ9H3G5 476 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 CTNNAL1Q9UBT7 734 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 ADAMTSL3P82987 1691 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 NPHP3-ACAD11A0A0J9YXS1 232 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 SETSIPP0DME0 302 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 MMP13P45452 471 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 PEX5P50542 639 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 TXLNGQ9NUQ3 528 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 RPS6KL1Q9Y6S9 549 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 CBX6O95503 412 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 BRAFP15056 766 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 BNIP1Q12981 228 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 PPFIBP2Q8ND30 876 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 TTLL11Q8NHH1 800 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.01□□□□□ -0.65
CLDN1-201ENST00000295522 TLCD1Q96CP7 247 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 CEP72Q9P209 647 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 SUGT1Q9Y2Z0 365 aa11.01□□□□□ -0.65
CLDN1-201ENST00000295522 LIN7AO14910 233 aaPredicted RBP11□□□□□ -0.65
CLDN1-201ENST00000295522 H2AFZP0C0S5 128 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 CALML3P27482 149 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 CACNA2D1P54289 1103 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 RASGRF1Q13972 1273 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 ZRSR2Q15696 482 aaKnown RBP11□□□□□ -0.65
CLDN1-201ENST00000295522 CNGA2Q16280 664 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 AADACL2Q6P093 401 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 CAPN12Q6ZSI9 719 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 TMTC3Q6ZXV5 915 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 H2AFVQ71UI9 128 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 STK32AQ8WU08 396 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 STMN2Q93045 179 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 PCMTD2Q9NV79 361 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 WDR35Q9P2L0 1181 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 ATP9AO75110 1047 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 SKIP12755 728 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 ATP6V1C1P21283 382 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 HNRNPH3P31942 346 aaKnown RBP11□□□□□ -0.65
CLDN1-201ENST00000295522 ARL6IP4Q66PJ3 421 aaKnown RBP11□□□□□ -0.65
CLDN1-201ENST00000295522 MYLK4Q86YV6 388 aaPredicted RBP11□□□□□ -0.65
CLDN1-201ENST00000295522 SCYL3Q8IZE3 742 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 SCFD2Q8WU76 684 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 IQCDQ96DY2 449 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 RXFP1Q9HBX9 757 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 KBTBD4Q9NVX7 518 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 SPATA31A3Q5VYP0 1347 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 CYP27B1O15528 508 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 AGTP01019 485 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 BCAMP50895 628 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 TRIP13Q15645 432 aaPredicted RBP11□□□□□ -0.65
CLDN1-201ENST00000295522 CFAP157Q5JU67 520 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 ZSCAN29Q8IWY8 852 aaPredicted RBP11□□□□□ -0.65
CLDN1-201ENST00000295522 LRRC15Q8TF66 581 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 C18orf8Q96DM3 657 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 LRRC37BQ96QE4 947 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 NAP1L3Q99457 506 aaPredicted RBP11□□□□□ -0.65
CLDN1-201ENST00000295522 SLITRK6Q9H5Y7 841 aa11□□□□□ -0.65
CLDN1-201ENST00000295522 OSGEPQ9NPF4 335 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms