RNA–Protein interactions for RNA: ENST00000294816.6

LMX1A-201, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-201ENST00000294816 DAGLBQ8NCG7 672 aa11.15□□□□□ -0.62
LMX1A-201ENST00000294816 NSUN4Q96CB9 384 aaKnown RBP11.15□□□□□ -0.62
LMX1A-201ENST00000294816 ZNF570Q96NI8 536 aa11.15□□□□□ -0.62
LMX1A-201ENST00000294816 TMEM47Q9BQJ4 181 aa11.15□□□□□ -0.62
LMX1A-201ENST00000294816 EBF2Q9HAK2 575 aa11.15□□□□□ -0.62
LMX1A-201ENST00000294816 OSGEPQ9NPF4 335 aa11.15□□□□□ -0.62
LMX1A-201ENST00000294816 BATF3Q9NR55 127 aa11.15□□□□□ -0.62
LMX1A-201ENST00000294816 HDAC9Q9UKV0 1011 aa11.15□□□□□ -0.62
LMX1A-201ENST00000294816 SLC12A4Q9UP95 1085 aa11.15□□□□□ -0.62
LMX1A-201ENST00000294816 TRIM33Q9UPN9 1127 aa11.15□□□□□ -0.62
LMX1A-201ENST00000294816 THRAP3Q9Y2W1 955 aaKnown RBP11.15□□□□□ -0.62
LMX1A-201ENST00000294816 GFPT2O94808 682 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 ADAMTS2O95450 1211 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 GSTA1P08263 222 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 NR2F2P24468 414 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 LACTBP83111 547 aaPredicted RBP11.14□□□□□ -0.63
LMX1A-201ENST00000294816 ITIH4Q14624 930 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 UBAP2Q5T6F2 1119 aaKnown RBP11.14□□□□□ -0.63
LMX1A-201ENST00000294816 DGKHQ86XP1 1220 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 TRIM59Q8IWR1 403 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 LRRC57Q8N9N7 239 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 FBXO25Q8TCJ0 367 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 CCHCR1Q8TD31 782 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 COA7Q96BR5 231 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 SLC4A9Q96Q91 983 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 ATP8A2Q9NTI2 1148 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 AIPL1Q9NZN9 384 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 TCP11X1B4DZS4 312 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 E9PMD0 336 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 ASAP2O43150 1006 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 KLRK1P26718 216 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 NCALDP61601 193 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 ADCY1Q08828 1119 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 LLGL1Q15334 1064 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 EXOC3L4Q17RC7 722 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 AP1ARQ63HQ0 302 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 MAB21L3Q8N8X9 362 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 GDAP1Q8TB36 358 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 ATXN2LQ8WWM7 1075 aaKnown RBP11.14□□□□□ -0.63
LMX1A-201ENST00000294816 RNF25Q96BH1 459 aaPredicted RBP11.14□□□□□ -0.63
LMX1A-201ENST00000294816 GANQ9H2C0 597 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 UCHL3P15374 230 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 TAF11Q15544 211 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 COBLL1Q53SF7 1204 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 NUGGCQ68CJ6 796 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 CCDC65Q8IXS2 484 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 SYCE1Q8N0S2 351 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 LRRC27Q9C0I9 530 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 SEMA4AQ9H3S1 761 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 PNMA3Q9UL41 463 aa11.14□□□□□ -0.63
LMX1A-201ENST00000294816 CES2O00748 559 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 PPFIA2O75334 1257 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 KRT16P08779 473 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 ATP11AP98196 1134 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 PSMD2Q13200 908 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 CRELD2Q6UXH1 353 aaPredicted RBP11.13□□□□□ -0.63
LMX1A-201ENST00000294816 GPBP1Q86WP2 473 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 KSR1Q8IVT5 923 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 MARCH10Q8NA82 808 aaPredicted RBP11.13□□□□□ -0.63
LMX1A-201ENST00000294816 PARD3BQ8TEW8 1205 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 ZNF483Q8TF39 744 aaPredicted RBP11.13□□□□□ -0.63
LMX1A-201ENST00000294816 FAM84BQ96KN1 310 aaPredicted RBP11.13□□□□□ -0.63
LMX1A-201ENST00000294816 PABPC3Q9H361 631 aaKnown RBP11.13□□□□□ -0.63
LMX1A-201ENST00000294816 EMILIN3Q9NT22 766 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 TMOD4Q9NZQ9 345 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 GNA14O95837 355 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 GALCP54803 685 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 ECM1Q16610 540 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 AADACL2Q6P093 401 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 IRF2BP2Q7Z5L9 587 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 PIGWQ7Z7B1 504 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 NT5DC3Q86UY8 548 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 SPDYE1Q8NFV5 336 aaPredicted RBP11.13□□□□□ -0.63
LMX1A-201ENST00000294816 ATP8B4Q8TF62 1192 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 CENPTQ96BT3 561 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 CEP63Q96MT8 703 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 ERP44Q9BS26 406 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 ERVK-5Q9HDB9 667 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 ARMCX3Q9UH62 379 aaPredicted RBP11.13□□□□□ -0.63
LMX1A-201ENST00000294816 KIAA1024Q9UPX6 916 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 FRMPD2Q68DX3 1309 aaPredicted RBP11.13□□□□□ -0.63
LMX1A-201ENST00000294816 KIF3CO14782 793 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 RASGRF2O14827 1237 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 SUN1O94901 812 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 MMP13P45452 471 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 PDE6CP51160 858 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 C10orf76Q5T2E6 689 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 BICDL1Q6ZP65 573 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 SUCLA2Q9P2R7 463 aaPredicted RBP11.13□□□□□ -0.63
LMX1A-201ENST00000294816 RASAL2Q9UJF2 1139 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 PTPN22Q9Y2R2 807 aa11.13□□□□□ -0.63
LMX1A-201ENST00000294816 USP15Q9Y4E8 981 aaPredicted RBP11.13□□□□□ -0.63
LMX1A-201ENST00000294816 MYH1P12882 1939 aa11.12□□□□□ -0.63
LMX1A-201ENST00000294816 MYH4Q9Y623 1939 aa11.12□□□□□ -0.63
LMX1A-201ENST00000294816 TNS2Q63HR2 1409 aa11.12□□□□□ -0.63
LMX1A-201ENST00000294816 AFF2P51816 1311 aa11.12□□□□□ -0.63
LMX1A-201ENST00000294816 CASZ1Q86V15 1759 aa11.12□□□□□ -0.63
LMX1A-201ENST00000294816 MPHOSPH10O00566 681 aaKnown RBP11.12□□□□□ -0.63
LMX1A-201ENST00000294816 RARAP10276 462 aa11.12□□□□□ -0.63
LMX1A-201ENST00000294816 GRIK3Q13003 919 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms