RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 SDF4Q9BRK5 362 aa10.37□□□□□ -0.75
HMGN1-201ENST00000288344 FOXP1Q9H334 677 aaPredicted RBP10.37□□□□□ -0.75
HMGN1-201ENST00000288344 UNC45AQ9H3U1 944 aa10.37□□□□□ -0.75
HMGN1-201ENST00000288344 CXXC1Q9P0U4 656 aaPredicted RBP10.37□□□□□ -0.75
HMGN1-201ENST00000288344 PRKAG2Q9UGJ0 569 aa10.37□□□□□ -0.75
HMGN1-201ENST00000288344 PCDHA10Q9Y5I2 948 aa10.37□□□□□ -0.75
HMGN1-201ENST00000288344 TANC1Q9C0D5 1861 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 C17orf102A2RUQ5 167 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 CHRNA1P02708 482 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 ACRP10323 421 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 GCFC2P16383 781 aaKnown RBP10.36□□□□□ -0.75
HMGN1-201ENST00000288344 XBP1P17861 261 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 PBX2P40425 430 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 KRT76Q01546 638 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 MGAT3Q09327 533 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 PPP2R5CQ13362 524 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 PPIGQ13427 754 aaKnown RBP eCLIP10.36□□□□□ -0.755e-19■■□□□ 12
HMGN1-201ENST00000288344 LETM2Q2VYF4 491 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 FAM47CQ5HY64 1035 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 FAM109BQ6ICB4 259 aaPredicted RBP10.36□□□□□ -0.75
HMGN1-201ENST00000288344 SWSAP1Q6NVH7 229 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 PADI6Q6TGC4 694 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 RUFY4Q6ZNE9 571 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 TMEM199Q8N511 208 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 ATP6V0A1Q93050 837 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 ZBTB10Q96DT7 871 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 LRCH3Q96II8 777 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 FAM20AQ96MK3 541 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 DDX25Q9UHL0 483 aaKnown RBP10.36□□□□□ -0.75
HMGN1-201ENST00000288344 SPTBN5Q9NRC6 3674 aaKnown RBP10.36□□□□□ -0.75
HMGN1-201ENST00000288344 IGSF9BQ9UPX0 1349 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 EVPLQ92817 2033 aa10.36□□□□□ -0.75
HMGN1-201ENST00000288344 CCDC194A0A1B0GVG4 234 aa10.35□□□□□ -0.75
HMGN1-201ENST00000288344 CAND2O75155 1236 aa10.35□□□□□ -0.75
HMGN1-201ENST00000288344 SELPP16109 830 aa10.35□□□□□ -0.75
HMGN1-201ENST00000288344 RFC2P35250 354 aa10.35□□□□□ -0.75
HMGN1-201ENST00000288344 GUCY1B3Q02153 619 aa10.35□□□□□ -0.75
HMGN1-201ENST00000288344 BFSP2Q13515 415 aa10.35□□□□□ -0.75
HMGN1-201ENST00000288344 GRIK4Q16099 956 aa10.35□□□□□ -0.75
HMGN1-201ENST00000288344 UGCGQ16739 394 aa10.35□□□□□ -0.75
HMGN1-201ENST00000288344 RDM1Q8NG50 284 aa10.35□□□□□ -0.75
HMGN1-201ENST00000288344 ATP8B4Q8TF62 1192 aa10.35□□□□□ -0.75
HMGN1-201ENST00000288344 SNX21Q969T3 373 aa10.35□□□□□ -0.75
HMGN1-201ENST00000288344 HSD17B14Q9BPX1 270 aa10.35□□□□□ -0.75
HMGN1-201ENST00000288344 NIFKQ9BYG3 293 aaKnown RBP10.35□□□□□ -0.75
HMGN1-201ENST00000288344 TMEM60Q9H2L4 133 aa10.35□□□□□ -0.75
HMGN1-201ENST00000288344 UPF2Q9HAU5 1272 aaKnown RBP10.35□□□□□ -0.75
HMGN1-201ENST00000288344 DISC1Q9NRI5 854 aa10.35□□□□□ -0.75
HMGN1-201ENST00000288344 WRAP73Q9P2S5 460 aaPredicted RBP10.35□□□□□ -0.75
HMGN1-201ENST00000288344 ZNF215Q9UL58 517 aaPredicted RBP10.35□□□□□ -0.75
HMGN1-201ENST00000288344 PCDHA2Q9Y5H9 948 aa10.35□□□□□ -0.75
HMGN1-201ENST00000288344 ADGRG1Q9Y653 693 aa10.35□□□□□ -0.75
HMGN1-201ENST00000288344 SIP14410 1827 aa10.35□□□□□ -0.75
HMGN1-201ENST00000288344 PTPRSQ13332 1948 aa10.35□□□□□ -0.75
HMGN1-201ENST00000288344 IGKV6-21A0A0C4DH24 114 aa10.34□□□□□ -0.75
HMGN1-201ENST00000288344 RRN3P2A6NIE6 340 aa10.34□□□□□ -0.75
HMGN1-201ENST00000288344 WDR64B1ANS9 1081 aa10.34□□□□□ -0.75
HMGN1-201ENST00000288344 DDX39AO00148 427 aaKnown RBP10.34□□□□□ -0.75
HMGN1-201ENST00000288344 HBP1O60381 514 aa10.34□□□□□ -0.75
HMGN1-201ENST00000288344 MARK3P27448 753 aa10.34□□□□□ -0.75
HMGN1-201ENST00000288344 SFNP31947 248 aa10.34□□□□□ -0.75
HMGN1-201ENST00000288344 LRCH2Q5VUJ6 765 aa10.34□□□□□ -0.75
HMGN1-201ENST00000288344 MIS18BP1Q6P0N0 1132 aa10.34□□□□□ -0.75
HMGN1-201ENST00000288344 LRRC8DQ7L1W4 858 aa10.34□□□□□ -0.75
HMGN1-201ENST00000288344 METTL3Q86U44 580 aaKnown RBP10.34□□□□□ -0.75
HMGN1-201ENST00000288344 KIAA0319LQ8IZA0 1049 aa10.34□□□□□ -0.75
HMGN1-201ENST00000288344 CRIPAKQ8N1N5 446 aa10.34□□□□□ -0.75
HMGN1-201ENST00000288344 NLRP7Q8WX94 980 aa10.34□□□□□ -0.75
HMGN1-201ENST00000288344 GLG1Q92896 1179 aa10.34□□□□□ -0.75
HMGN1-201ENST00000288344 C8orf76Q96K31 380 aa10.34□□□□□ -0.75
HMGN1-201ENST00000288344 ZNF302Q9NR11 478 aa10.34□□□□□ -0.75
HMGN1-201ENST00000288344 UNC80Q8N2C7 3258 aa10.34□□□□□ -0.75
HMGN1-201ENST00000288344 XIRP2A4UGR9 3374 aa10.34□□□□□ -0.75
HMGN1-201ENST00000288344 CCNT1O60563 726 aaKnown RBP10.33□□□□□ -0.76
HMGN1-201ENST00000288344 SLITRK3O94933 977 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 PARNO95453 639 aaKnown RBP10.33□□□□□ -0.76
HMGN1-201ENST00000288344 C22orf31O95567 290 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 FGBP02675 491 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 PSAPP07602 524 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 PFKMP08237 780 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 GNAT1P11488 350 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 SMAD3P84022 425 aaKnown RBP10.33□□□□□ -0.76
HMGN1-201ENST00000288344 PPFIA1Q13136 1202 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 PLEKHG4Q58EX7 1191 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 ZNF484Q5JVG2 852 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 PDXDC2PQ6P474 469 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 MTHFD1LQ6UB35 978 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 NOSTRINQ8IVI9 506 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 RPUSD2Q8IZ73 545 aaKnown RBP10.33□□□□□ -0.76
HMGN1-201ENST00000288344 TRAPPC12Q8WVT3 735 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 TEKT3Q9BXF9 490 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 GABBR1Q9UBS5 961 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 KDM3AQ9Y4C1 1321 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 VCANP13611 3396 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 SMIM35A0A1B0GVV1 85 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 GRXCR1A8MXD5 290 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 RSPH10B2B2RC85 870 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 GAS7O60861 476 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 RSPH10BP0C881 870 aa10.33□□□□□ -0.76
HMGN1-201ENST00000288344 KLRC1P26715 233 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms