RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 TNNC1P63316 161 aa9.97□□□□□ -0.81
MSH4-201ENST00000263187 KNOP1Q1ED39 458 aaKnown RBP9.97□□□□□ -0.81
MSH4-201ENST00000263187 NBPF9Q3BBW0 867 aa9.97□□□□□ -0.81
MSH4-201ENST00000263187 RC3H1Q5TC82 1133 aaKnown RBP9.97□□□□□ -0.81
MSH4-201ENST00000263187 SLF2Q8IX21 1173 aa9.97□□□□□ -0.81
MSH4-201ENST00000263187 EFCAB13Q8IY85 973 aa9.97□□□□□ -0.81
MSH4-201ENST00000263187 MDM1Q8TC05 714 aa9.97□□□□□ -0.81
MSH4-201ENST00000263187 CAVIN3Q969G5 261 aa9.97□□□□□ -0.81
MSH4-201ENST00000263187 TNRC6CQ9HCJ0 1690 aaKnown RBP9.97□□□□□ -0.81
MSH4-201ENST00000263187 LAMB2P55268 1798 aa9.96□□□□□ -0.81
MSH4-201ENST00000263187 GOLGA6L10A6NI86 522 aa9.96□□□□□ -0.81
MSH4-201ENST00000263187 SPDYE3A6NKU9 549 aa9.96□□□□□ -0.81
MSH4-201ENST00000263187 MEIS2O14770 477 aa9.96□□□□□ -0.81
MSH4-201ENST00000263187 TBCAO75347 108 aaKnown RBP9.96□□□□□ -0.81
MSH4-201ENST00000263187 CFBP00751 764 aa9.96□□□□□ -0.81
MSH4-201ENST00000263187 FGGP02679 453 aa9.96□□□□□ -0.81
MSH4-201ENST00000263187 SPATA31C1P0DKV0 1188 aa9.96□□□□□ -0.81
MSH4-201ENST00000263187 GYS1P13807 737 aa9.96□□□□□ -0.81
MSH4-201ENST00000263187 COBLL1Q53SF7 1204 aa9.96□□□□□ -0.81
MSH4-201ENST00000263187 ILDR2Q71H61 639 aa9.96□□□□□ -0.81
MSH4-201ENST00000263187 PALB2Q86YC2 1186 aa9.96□□□□□ -0.81
MSH4-201ENST00000263187 OTUD6BQ8N6M0 293 aa9.96□□□□□ -0.81
MSH4-201ENST00000263187 GLG1Q92896 1179 aa9.96□□□□□ -0.81
MSH4-201ENST00000263187 TAS2R14Q9NYV8 317 aa9.96□□□□□ -0.81
MSH4-201ENST00000263187 TMOD4Q9NZQ9 345 aa9.96□□□□□ -0.81
MSH4-201ENST00000263187 SCAF8Q9UPN6 1271 aaKnown RBP9.96□□□□□ -0.81
MSH4-201ENST00000263187 ATP8A1Q9Y2Q0 1164 aa9.96□□□□□ -0.81
MSH4-201ENST00000263187 PCDHGC5Q9Y5F6 944 aa9.96□□□□□ -0.81
MSH4-201ENST00000263187 A0A087WUV0 522 aaPredicted RBP9.96□□□□□ -0.82
MSH4-201ENST00000263187 TISP43B9A030 160 aa9.96□□□□□ -0.82
MSH4-201ENST00000263187 KIAA0754O94854 1291 aa9.96□□□□□ -0.82
MSH4-201ENST00000263187 SNHG28P0DPA3 235 aa9.96□□□□□ -0.82
MSH4-201ENST00000263187 MNAT1P51948 309 aa9.96□□□□□ -0.82
MSH4-201ENST00000263187 DDR1Q08345 913 aa9.96□□□□□ -0.82
MSH4-201ENST00000263187 SLC20A2Q08357 652 aa9.96□□□□□ -0.82
MSH4-201ENST00000263187 UAP1Q16222 522 aaPredicted RBP9.96□□□□□ -0.82
MSH4-201ENST00000263187 ZNF746Q6NUN9 644 aaPredicted RBP9.96□□□□□ -0.82
MSH4-201ENST00000263187 CCDC174Q6PII3 467 aa9.96□□□□□ -0.82
MSH4-201ENST00000263187 CEP63Q96MT8 703 aa9.96□□□□□ -0.82
MSH4-201ENST00000263187 PCIF1Q9H4Z3 704 aa9.96□□□□□ -0.82
MSH4-201ENST00000263187 ACP6Q9NPH0 428 aa9.96□□□□□ -0.82
MSH4-201ENST00000263187 ZBTB21Q9ULJ3 1066 aa9.96□□□□□ -0.82
MSH4-201ENST00000263187 NOVA2Q9UNW9 492 aaKnown RBP9.96□□□□□ -0.82
MSH4-201ENST00000263187 RBAK-RBAKDNI3L0D1 243 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 DDX3XO00571 662 aaKnown RBP eCLIP9.95□□□□□ -0.82
MSH4-201ENST00000263187 HLA-DOAP06340 250 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 CERKLQ49MI3 558 aaPredicted RBP9.95□□□□□ -0.82
MSH4-201ENST00000263187 ZNF572Q7Z3I7 529 aaPredicted RBP9.95□□□□□ -0.82
MSH4-201ENST00000263187 ZNF622Q969S3 477 aaKnown RBP eCLIP9.95□□□□□ -0.82
MSH4-201ENST00000263187 IQCDQ96DY2 449 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 ATP6V1G3Q96LB4 118 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 CCT8L2Q96SF2 557 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 TAF1DQ9H5J8 278 aaPredicted RBP9.95□□□□□ -0.82
MSH4-201ENST00000263187 AIPL1Q9NZN9 384 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 PPP1R9AQ9ULJ8 1098 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 IGSF9BQ9UPX0 1349 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 H2AFZP0C0S5 128 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 GALCP54803 685 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 JAG1P78504 1218 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 DHX9Q08211 1270 aaKnown RBP9.95□□□□□ -0.82
MSH4-201ENST00000263187 UBAP2Q5T6F2 1119 aaKnown RBP9.95□□□□□ -0.82
MSH4-201ENST00000263187 H2AFVQ71UI9 128 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 TPCN2Q8NHX9 752 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 ZNF473Q8WTR7 871 aaKnown RBP9.95□□□□□ -0.82
MSH4-201ENST00000263187 TSKSQ9UJT2 592 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 GAKO14976 1311 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 KDM3AQ9Y4C1 1321 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 F5H6K3 240 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 GCOM1H8Y6P7 765 aaPredicted RBP9.95□□□□□ -0.82
MSH4-201ENST00000263187 PPEF1O14829 653 aaPredicted RBP9.95□□□□□ -0.82
MSH4-201ENST00000263187 MSH4O15457 936 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 EVI5O60447 810 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 GNA14O95837 355 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 MYZAPP0CAP1 466 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 ITIH3Q06033 890 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 KLRC3Q07444 240 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 SEMA3FQ13275 785 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 MSL1Q68DK7 614 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 APOBEC3HQ6NTF7 200 aaKnown RBP9.95□□□□□ -0.82
MSH4-201ENST00000263187 BANK1Q8NDB2 785 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 TBC1D22AQ8WUA7 517 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 KCNMB3Q9NPA1 279 aa9.95□□□□□ -0.82
MSH4-201ENST00000263187 ATF5Q9Y2D1 282 aaPredicted RBP9.95□□□□□ -0.82
MSH4-201ENST00000263187 NAV1Q8NEY1 1877 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 IGKV6D-41A0A0C4DH26 115 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 PGRMC1O00264 195 aaKnown RBP9.94□□□□□ -0.82
MSH4-201ENST00000263187 ATMINO43313 823 aaPredicted RBP9.94□□□□□ -0.82
MSH4-201ENST00000263187 BUB1BO60566 1050 aaPredicted RBP9.94□□□□□ -0.82
MSH4-201ENST00000263187 EPB41P11171 864 aaKnown RBP9.94□□□□□ -0.82
MSH4-201ENST00000263187 ECHS1P30084 290 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 USP11P51784 963 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 ICA1Q05084 483 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 IFFO1Q0D2I5 559 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 KRT71Q3SY84 523 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 GPATCH4Q5T3I0 446 aaKnown RBP9.94□□□□□ -0.82
MSH4-201ENST00000263187 ICE2Q659A1 982 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 GBP6Q6ZN66 633 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 PHLDB2Q86SQ0 1253 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 NLRP14Q86W24 1093 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 GPATCH11Q8N954 259 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms