RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 P2RX7Q99572 595 aaKnown RBP10.99□□□□□ -0.65
LIG3-201ENST00000262327 GANQ9H2C0 597 aa10.99□□□□□ -0.65
LIG3-201ENST00000262327 LRRC4CQ9HCJ2 640 aa10.99□□□□□ -0.65
LIG3-201ENST00000262327 PCDHB13Q9Y5F0 798 aa10.99□□□□□ -0.65
LIG3-201ENST00000262327 PCDHA2Q9Y5H9 948 aa10.99□□□□□ -0.65
LIG3-201ENST00000262327 DDX60LQ5H9U9 1706 aaKnown RBP10.99□□□□□ -0.65
LIG3-201ENST00000262327 CETN3O15182 167 aa10.99□□□□□ -0.65
LIG3-201ENST00000262327 NR1D1P20393 614 aa10.99□□□□□ -0.65
LIG3-201ENST00000262327 INPP5BP32019 993 aa10.99□□□□□ -0.65
LIG3-201ENST00000262327 DACT2Q5SW24 774 aa10.99□□□□□ -0.65
LIG3-201ENST00000262327 RBM46Q8TBY0 533 aaKnown RBP10.99□□□□□ -0.65
LIG3-201ENST00000262327 CELF4Q9BZC1 486 aaKnown RBP10.99□□□□□ -0.65
LIG3-201ENST00000262327 RBAK-RBAKDNI3L0D1 243 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 MYO1FO00160 1098 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 TTLL1O95922 423 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 LSP1P33241 339 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 MRPL12P52815 198 aaKnown RBP10.98□□□□□ -0.65
LIG3-201ENST00000262327 NFIAQ12857 509 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 RNF187Q5TA31 235 aaPredicted RBP10.98□□□□□ -0.65
LIG3-201ENST00000262327 DPH5Q9H2P9 285 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 USP40Q9NVE5 1235 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 AMACRQ9UHK6 382 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 PCDHA1Q9Y5I3 950 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 CAPN7Q9Y6W3 813 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 UCHL3P15374 230 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 TMOD1P28289 359 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 CDC37Q16543 378 aaPredicted RBP10.98□□□□□ -0.65
LIG3-201ENST00000262327 QRICH1Q2TAL8 776 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 NBPF20Q3BBV1 942 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 PPP4R3AQ6IN85 833 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 ALKBH5Q6P6C2 394 aaKnown RBP10.98□□□□□ -0.65
LIG3-201ENST00000262327 IRF2BP2Q7Z5L9 587 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 CATSPER3Q86XQ3 398 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 CYP2W1Q8TAV3 490 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 PCDHGC5Q9Y5F6 944 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 NAV1Q8NEY1 1877 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 ABCB11O95342 1321 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 E7EVH7 732 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 ZBTB5O15062 677 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 AKAP3O75969 853 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 KIF4AO95239 1232 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 ABCB4P21439 1286 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 IBSPP21815 317 aaPredicted RBP10.98□□□□□ -0.65
LIG3-201ENST00000262327 HOXD13P35453 343 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 IKQ13123 557 aaPredicted RBP10.98□□□□□ -0.65
LIG3-201ENST00000262327 PRPF4BQ13523 1007 aaKnown RBP10.98□□□□□ -0.65
LIG3-201ENST00000262327 MCTP2Q6DN12 878 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 GBP6Q6ZN66 633 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 METTL13Q8N6R0 699 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 U2AF1L4Q8WU68 220 aaKnown RBP10.98□□□□□ -0.65
LIG3-201ENST00000262327 UBLCP1Q8WVY7 318 aaPredicted RBP10.98□□□□□ -0.65
LIG3-201ENST00000262327 REEP2Q9BRK0 252 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 LRRC27Q9C0I9 530 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 LUC7LQ9NQ29 371 aaKnown RBP10.98□□□□□ -0.65
LIG3-201ENST00000262327 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.98□□□□□ -0.657e-7■■■■■ 136.4
LIG3-201ENST00000262327 ARMCX3Q9UH62 379 aaPredicted RBP10.98□□□□□ -0.65
LIG3-201ENST00000262327 SERPINB13Q9UIV8 391 aa10.98□□□□□ -0.65
LIG3-201ENST00000262327 BRCA1P38398 1863 aaKnown RBP10.97□□□□□ -0.65
LIG3-201ENST00000262327 ZBTB39O15060 712 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 GFPT2O94808 682 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 HOXA13P31271 388 aaPredicted RBP10.97□□□□□ -0.65
LIG3-201ENST00000262327 MAP2K2P36507 400 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 CLK2P49760 499 aaKnown RBP10.97□□□□□ -0.65
LIG3-201ENST00000262327 MAP2K1Q02750 393 aaPredicted RBP10.97□□□□□ -0.65
LIG3-201ENST00000262327 EXOC3L4Q17RC7 722 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 CHADLQ6NUI6 762 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 PIGOQ8TEQ8 1089 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 TEKT1Q969V4 418 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 DHX36Q9H2U1 1008 aaKnown RBP10.97□□□□□ -0.65
LIG3-201ENST00000262327 RGL1Q9NZL6 768 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 TSKSQ9UJT2 592 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 MYO3BQ8WXR4 1341 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 DCDC2CA8MYV0 355 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 H0YHG0 523 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 SART1O43290 800 aaKnown RBP10.97□□□□□ -0.65
LIG3-201ENST00000262327 DAPK3O43293 454 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 ATP2C2O75185 946 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 EPB41P11171 864 aaKnown RBP10.97□□□□□ -0.65
LIG3-201ENST00000262327 PON1P27169 355 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 SHMT1P34896 483 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 HSD17B3P37058 310 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 TNNC1P63316 161 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 GLE1Q53GS7 698 aaKnown RBP10.97□□□□□ -0.65
LIG3-201ENST00000262327 SWT1Q5T5J6 900 aaKnown RBP10.97□□□□□ -0.65
LIG3-201ENST00000262327 CEP63Q96MT8 703 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 ANO3Q9BYT9 981 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 SPON1Q9HCB6 807 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 OSGEPQ9NPF4 335 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 NAGPAQ9UK23 515 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 NR2E1Q9Y466 385 aa10.97□□□□□ -0.65
LIG3-201ENST00000262327 ZNF646O15015 1829 aaPredicted RBP10.96□□□□□ -0.65
LIG3-201ENST00000262327 KRIT1O00522 736 aa10.96□□□□□ -0.65
LIG3-201ENST00000262327 GCNT3O95395 438 aa10.96□□□□□ -0.65
LIG3-201ENST00000262327 SNHG28P0DPA3 235 aa10.96□□□□□ -0.65
LIG3-201ENST00000262327 SMARCA1P28370 1054 aa10.96□□□□□ -0.65
LIG3-201ENST00000262327 SLC12A3P55017 1021 aa10.96□□□□□ -0.65
LIG3-201ENST00000262327 SKOR1P84550 965 aa10.96□□□□□ -0.65
LIG3-201ENST00000262327 GABPAQ06546 454 aa10.96□□□□□ -0.65
LIG3-201ENST00000262327 IFT88Q13099 833 aa10.96□□□□□ -0.65
LIG3-201ENST00000262327 UAP1Q16222 522 aaPredicted RBP10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms