RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 CD302Q8IX05 232 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 FAM204AQ9H8W3 233 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 FANCLQ9NW38 375 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 ZBTB12Q9Y330 459 aaPredicted RBP14.84□□□□□ -0.03
LDLR-201ENST00000252444 COL1A1P02452 1464 aaPredicted RBP14.84□□□□□ -0.03
LDLR-201ENST00000252444 USP17L6PQ6QN14 398 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 POTEDQ86YR6 584 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 STAG2Q8N3U4 1231 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 RAET1EQ8TD07 263 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 ANKFY1Q9P2R3 1169 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 FGRP09769 529 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 MYBL1P10243 752 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 STAT5BP51692 787 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 TCP11X2Q5H9J9 407 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 CATSPER4Q7RTX7 472 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 GPRC5DQ9NZD1 345 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 GINS2Q9Y248 185 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 IER5Q5VY09 327 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 SMC1BQ8NDV3 1235 aa14.84□□□□□ -0.03
LDLR-201ENST00000252444 KLRG2A4D1S0 409 aaPredicted RBP14.83□□□□□ -0.03
LDLR-201ENST00000252444 RPA1P27694 616 aa14.83□□□□□ -0.03
LDLR-201ENST00000252444 CTTNQ14247 550 aaKnown RBP14.83□□□□□ -0.03
LDLR-201ENST00000252444 MYBPC2Q14324 1141 aa14.83□□□□□ -0.03
LDLR-201ENST00000252444 GABBR1Q9UBS5 961 aa14.83□□□□□ -0.03
LDLR-201ENST00000252444 NUB1Q9Y5A7 615 aa14.83□□□□□ -0.03
LDLR-201ENST00000252444 DAPK3O43293 454 aa14.83□□□□□ -0.04
LDLR-201ENST00000252444 KLRK1P26718 216 aa14.83□□□□□ -0.04
LDLR-201ENST00000252444 ZNF365Q70YC5 407 aa14.83□□□□□ -0.04
LDLR-201ENST00000252444 SLC12A6Q9UHW9 1150 aa14.83□□□□□ -0.04
LDLR-201ENST00000252444 IGBP1P78318 339 aa14.83□□□□□ -0.04
LDLR-201ENST00000252444 HSP90AA4PQ58FG1 418 aa14.83□□□□□ -0.04
LDLR-201ENST00000252444 APOBEC3HQ6NTF7 200 aaKnown RBP14.83□□□□□ -0.04
LDLR-201ENST00000252444 VSTM4Q8IW00 320 aa14.83□□□□□ -0.04
LDLR-201ENST00000252444 SHCBP1Q8NEM2 672 aa14.83□□□□□ -0.04
LDLR-201ENST00000252444 STRIP2Q9ULQ0 834 aa14.83□□□□□ -0.04
LDLR-201ENST00000252444 POLR3GO15318 223 aaPredicted RBP14.83□□□□□ -0.04
LDLR-201ENST00000252444 SHMT1P34896 483 aa14.83□□□□□ -0.04
LDLR-201ENST00000252444 RHOT2Q8IXI1 618 aa14.83□□□□□ -0.04
LDLR-201ENST00000252444 PGBD1Q96JS3 809 aa14.83□□□□□ -0.04
LDLR-201ENST00000252444 VTA1Q9NP79 307 aa14.83□□□□□ -0.04
LDLR-201ENST00000252444 TXNP10599 105 aaKnown RBP14.82□□□□□ -0.04
LDLR-201ENST00000252444 GJA10Q969M2 543 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 HPS5Q9UPZ3 1129 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 ZMYM2Q9UBW7 1377 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 TMEM110-MUSTN1A8MSY1 372 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 RNF8O76064 485 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 TAP1Q03518 808 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 RAD51AP2Q09MP3 1159 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 NDST4Q9H3R1 872 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 FAM207AQ9NSI2 230 aaPredicted RBP14.82□□□□□ -0.04
LDLR-201ENST00000252444 ERAP1Q9NZ08 941 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 LGALS16A8MUM7 142 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 DGKDQ16760 1214 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 POLR3FQ9H1D9 316 aaPredicted RBP14.82□□□□□ -0.04
LDLR-201ENST00000252444 PLCB1Q9NQ66 1216 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 TYW5A2RUC4 315 aaKnown RBP14.82□□□□□ -0.04
LDLR-201ENST00000252444 CLDN3O15551 220 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 NR3C1P04150 777 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 BAATQ14032 418 aaPredicted RBP14.82□□□□□ -0.04
LDLR-201ENST00000252444 RINT1Q6NUQ1 792 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 C3orf67Q6ZVT6 689 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 GPD1LQ8N335 351 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 EHD2Q9NZN4 543 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 PLIN4Q96Q06 1357 aa14.82□□□□□ -0.04
LDLR-201ENST00000252444 YWHABP31946 246 aaKnown RBP14.81□□□□□ -0.04
LDLR-201ENST00000252444 CIITAP33076 1130 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 POLR2FP61218 127 aaKnown RBP14.81□□□□□ -0.04
LDLR-201ENST00000252444 LGSNQ5TDP6 509 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 BBS5Q8N3I7 341 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 DHX38Q92620 1227 aaKnown RBP14.81□□□□□ -0.04
LDLR-201ENST00000252444 PCDHB4Q9Y5E5 795 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 RHOBTB3O94955 611 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 PLCB3Q01970 1234 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 DCAF4L1Q3SXM0 396 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 DPH6Q7L8W6 267 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 U2AF1L4Q8WU68 220 aaKnown RBP14.81□□□□□ -0.04
LDLR-201ENST00000252444 IQCGQ9H095 443 aaKnown RBP14.81□□□□□ -0.04
LDLR-201ENST00000252444 LZTFL1Q9NQ48 299 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 PLS3P13797 630 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 GPC3P51654 580 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 AIFM3Q96NN9 605 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 NACA2Q9H009 215 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 SLC38A7Q9NVC3 462 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 PRMT7Q9NVM4 692 aaPredicted RBP14.81□□□□□ -0.04
LDLR-201ENST00000252444 ALDH3A1P30838 453 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 PAK2Q13177 524 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 BZW1Q7L1Q6 419 aaKnown RBP14.81□□□□□ -0.04
LDLR-201ENST00000252444 ZNF354CQ86Y25 554 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 STAMQ92783 540 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 CENPHQ9H3R5 247 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 ARFGEF2Q9Y6D5 1785 aa14.81□□□□□ -0.04
LDLR-201ENST00000252444 ZBTB24O43167 697 aaPredicted RBP14.8□□□□□ -0.04
LDLR-201ENST00000252444 STAMBPO95630 424 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 CYP3A4P08684 503 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 SAMD7Q7Z3H4 446 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 PPM1KQ8N3J5 372 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 OXER1Q8TDS5 423 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 EPSTI1Q96J88 318 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 FAM196BA6NMK8 535 aa14.8□□□□□ -0.04
LDLR-201ENST00000252444 SART1O43290 800 aaKnown RBP14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms