RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 TDP2O95551 362 aa25.07■■□□□ 1.6
VTI1B-201ENST00000216456 VTNP04004 478 aa25.07■■□□□ 1.6
VTI1B-201ENST00000216456 KCNA5P22460 613 aa25.07■■□□□ 1.6
VTI1B-201ENST00000216456 NFX1Q12986 1120 aaKnown RBP25.07■■□□□ 1.6
VTI1B-201ENST00000216456 BTG3Q14201 252 aaPredicted RBP25.07■■□□□ 1.6
VTI1B-201ENST00000216456 KIZQ2M2Z5 673 aa25.07■■□□□ 1.6
VTI1B-201ENST00000216456 ZNF484Q5JVG2 852 aa25.07■■□□□ 1.6
VTI1B-201ENST00000216456 BICD2Q8TD16 824 aa25.07■■□□□ 1.6
VTI1B-201ENST00000216456 TBCKQ8TEA7 893 aa25.07■■□□□ 1.6
VTI1B-201ENST00000216456 ZNF668Q96K58 619 aaPredicted RBP25.07■■□□□ 1.6
VTI1B-201ENST00000216456 PDRG1Q9NUG6 133 aa25.07■■□□□ 1.6
VTI1B-201ENST00000216456 SAMM50Q9Y512 469 aa25.07■■□□□ 1.6
VTI1B-201ENST00000216456 PCDHA10Q9Y5I2 948 aa25.07■■□□□ 1.6
VTI1B-201ENST00000216456 MRPL42Q9Y6G3 142 aaKnown RBP25.07■■□□□ 1.6
VTI1B-201ENST00000216456 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP25.06■■□□□ 1.6
VTI1B-201ENST00000216456 BMPR1AP36894 532 aa25.06■■□□□ 1.6
VTI1B-201ENST00000216456 CLCN3P51790 818 aa25.06■■□□□ 1.6
VTI1B-201ENST00000216456 BANK1Q8NDB2 785 aa25.06■■□□□ 1.6
VTI1B-201ENST00000216456 TNPO1Q92973 898 aaKnown RBP25.06■■□□□ 1.6
VTI1B-201ENST00000216456 OSMRQ99650 979 aa25.06■■□□□ 1.6
VTI1B-201ENST00000216456 TM6SF1Q9BZW5 370 aa25.06■■□□□ 1.6
VTI1B-201ENST00000216456 ERVK-5Q9HDB9 667 aa25.06■■□□□ 1.6
VTI1B-201ENST00000216456 GJB4Q9NTQ9 266 aa25.06■■□□□ 1.6
VTI1B-201ENST00000216456 RAPGEFL1Q9UHV5 662 aa25.06■■□□□ 1.6
VTI1B-201ENST00000216456 KDM3AQ9Y4C1 1321 aa25.06■■□□□ 1.6
VTI1B-201ENST00000216456 NCOR1O75376 2440 aa25.05■■□□□ 1.6
VTI1B-201ENST00000216456 NEFLP07196 543 aa25.05■■□□□ 1.6
VTI1B-201ENST00000216456 PSAPP07602 524 aa25.05■■□□□ 1.6
VTI1B-201ENST00000216456 MCTP2Q6DN12 878 aa25.05■■□□□ 1.6
VTI1B-201ENST00000216456 NME8Q8N427 588 aa25.05■■□□□ 1.6
VTI1B-201ENST00000216456 METTL13Q8N6R0 699 aa25.05■■□□□ 1.6
VTI1B-201ENST00000216456 GADD45GIP1Q8TAE8 222 aaPredicted RBP25.05■■□□□ 1.6
VTI1B-201ENST00000216456 BBXQ8WY36 941 aaPredicted RBP25.05■■□□□ 1.6
VTI1B-201ENST00000216456 KHSRPQ92945 711 aaKnown RBP eCLIP25.05■■□□□ 1.6
VTI1B-201ENST00000216456 ZNF274Q96GC6 653 aaPredicted RBP25.05■■□□□ 1.6
VTI1B-201ENST00000216456 UNC45AQ9H3U1 944 aa25.05■■□□□ 1.6
VTI1B-201ENST00000216456 CD320Q9NPF0 282 aa25.05■■□□□ 1.6
VTI1B-201ENST00000216456 SH3GLB2Q9NR46 395 aa25.05■■□□□ 1.6
VTI1B-201ENST00000216456 PCDHA4Q9UN74 947 aa25.05■■□□□ 1.6
VTI1B-201ENST00000216456 KCNJ14Q9UNX9 436 aa25.05■■□□□ 1.6
VTI1B-201ENST00000216456 SQORQ9Y6N5 450 aa25.05■■□□□ 1.6
VTI1B-201ENST00000216456 COL1A2P08123 1366 aa25.05■■□□□ 1.6
VTI1B-201ENST00000216456 EVPLQ92817 2033 aa25.04■■□□□ 1.6
VTI1B-201ENST00000216456 H3BQ06 376 aaPredicted RBP25.04■■□□□ 1.6
VTI1B-201ENST00000216456 M0R2N6 131 aa25.04■■□□□ 1.6
VTI1B-201ENST00000216456 CPLX1O14810 134 aa25.04■■□□□ 1.6
VTI1B-201ENST00000216456 SCRN1Q12765 414 aa25.04■■□□□ 1.6
VTI1B-201ENST00000216456 PTPROQ16827 1216 aa25.04■■□□□ 1.6
VTI1B-201ENST00000216456 SMAP1Q8IYB5 467 aaPredicted RBP25.04■■□□□ 1.6
VTI1B-201ENST00000216456 TRIM22Q8IYM9 498 aa25.04■■□□□ 1.6
VTI1B-201ENST00000216456 LRRC71Q8N4P6 559 aa25.04■■□□□ 1.6
VTI1B-201ENST00000216456 SLC5A5Q92911 643 aa25.04■■□□□ 1.6
VTI1B-201ENST00000216456 ALG13Q9NP73 1137 aaKnown RBP25.04■■□□□ 1.6
VTI1B-201ENST00000216456 DISC1Q9NRI5 854 aa25.04■■□□□ 1.6
VTI1B-201ENST00000216456 HCSTQ9UBK5 93 aa25.04■■□□□ 1.6
VTI1B-201ENST00000216456 TCEAL9Q9UHQ7 104 aa25.04■■□□□ 1.6
VTI1B-201ENST00000216456 ATG2AQ2TAZ0 1938 aa25.04■■□□□ 1.6
VTI1B-201ENST00000216456 TMEM150BA6NC51 233 aa25.03■■□□□ 1.6
VTI1B-201ENST00000216456 C5orf67F2Z3F1 127 aa25.03■■□□□ 1.6
VTI1B-201ENST00000216456 EPB41L2O43491 1005 aaKnown RBP25.03■■□□□ 1.6
VTI1B-201ENST00000216456 RPS6KA5O75582 802 aa25.03■■□□□ 1.6
VTI1B-201ENST00000216456 DEXIO95424 95 aa25.03■■□□□ 1.6
VTI1B-201ENST00000216456 RPLP2P05387 115 aaKnown RBP25.03■■□□□ 1.6
VTI1B-201ENST00000216456 EP400NLQ6ZTU2 488 aa25.03■■□□□ 1.6
VTI1B-201ENST00000216456 NPAS4Q8IUM7 802 aa25.03■■□□□ 1.6
VTI1B-201ENST00000216456 BLIDQ8IZY5 108 aa25.03■■□□□ 1.6
VTI1B-201ENST00000216456 CLP1Q92989 425 aaKnown RBP25.03■■□□□ 1.6
VTI1B-201ENST00000216456 FTHL17Q9BXU8 183 aa25.03■■□□□ 1.6
VTI1B-201ENST00000216456 ST3GAL5Q9UNP4 418 aa25.03■■□□□ 1.6
VTI1B-201ENST00000216456 WDR64B1ANS9 1081 aa25.02■■□□□ 1.6
VTI1B-201ENST00000216456 GAS7O60861 476 aa25.02■■□□□ 1.6
VTI1B-201ENST00000216456 GPR32O75388 356 aa25.02■■□□□ 1.6
VTI1B-201ENST00000216456 IL9P15248 144 aa25.02■■□□□ 1.6
VTI1B-201ENST00000216456 GTF2F1P35269 517 aaKnown RBP eCLIP25.02■■□□□ 1.6
VTI1B-201ENST00000216456 USP11P51784 963 aa25.02■■□□□ 1.6
VTI1B-201ENST00000216456 FAM228AQ86W67 206 aa25.02■■□□□ 1.6
VTI1B-201ENST00000216456 ADAM2Q99965 735 aa25.02■■□□□ 1.6
VTI1B-201ENST00000216456 SH2D3AQ9BRG2 576 aa25.02■■□□□ 1.6
VTI1B-201ENST00000216456 TPCN1Q9ULQ1 816 aa25.02■■□□□ 1.6
VTI1B-201ENST00000216456 RALGAPA2Q2PPJ7 1873 aa25.02■■□□□ 1.6
VTI1B-201ENST00000216456 DNAJB1P25685 340 aa25.01■■□□□ 1.59
VTI1B-201ENST00000216456 PRKCEQ02156 737 aa25.01■■□□□ 1.59
VTI1B-201ENST00000216456 CAMK1Q14012 370 aa25.01■■□□□ 1.59
VTI1B-201ENST00000216456 TIGD5Q53EQ6 642 aa25.01■■□□□ 1.59
VTI1B-201ENST00000216456 LRCH2Q5VUJ6 765 aa25.01■■□□□ 1.59
VTI1B-201ENST00000216456 NSUN3Q9H649 340 aaKnown RBP25.01■■□□□ 1.59
VTI1B-201ENST00000216456 PSMD10O75832 226 aa25■■□□□ 1.59
VTI1B-201ENST00000216456 INF2Q27J81 1249 aa25■■□□□ 1.59
VTI1B-201ENST00000216456 FAM102BQ5T8I3 360 aa25■■□□□ 1.59
VTI1B-201ENST00000216456 EFCAB12Q6NXP0 572 aa25■■□□□ 1.59
VTI1B-201ENST00000216456 LINC01465Q8N7H1 131 aa25■■□□□ 1.59
VTI1B-201ENST00000216456 TEKT3Q9BXF9 490 aa25■■□□□ 1.59
VTI1B-201ENST00000216456 EPHX3Q9H6B9 360 aa25■■□□□ 1.59
VTI1B-201ENST00000216456 SLC37A4O43826 429 aa24.99■■□□□ 1.59
VTI1B-201ENST00000216456 OATP04181 439 aa24.99■■□□□ 1.59
VTI1B-201ENST00000216456 RB1P06400 928 aa24.99■■□□□ 1.59
VTI1B-201ENST00000216456 MYH9P35579 1960 aaKnown RBP24.99■■□□□ 1.59
VTI1B-201ENST00000216456 SARSP49591 514 aaKnown RBP24.99■■□□□ 1.59
VTI1B-201ENST00000216456 DRP2Q13474 957 aa24.99■■□□□ 1.59
VTI1B-201ENST00000216456 LEXMQ3ZCV2 418 aa24.99■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms