RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 MCF2P10911 925 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PYGMP11217 842 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 GUCY2CP25092 1073 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 ARL4AP40617 200 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 TUBB3Q13509 450 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 CWF19L2Q2TBE0 894 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 FAM83BQ5T0W9 1011 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 CLYBLQ8N0X4 340 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 TRIM58Q8NG06 486 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 FAM71BQ8TC56 605 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 MGARPQ8TDB4 240 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 SH3GL1Q99961 368 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 MRPS26Q9BYN8 205 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 SLC38A10Q9HBR0 1119 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 GOLGA8KD6RF30 607 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 M0QYT0 321 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 CHL1O00533 1208 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 KHDRBS3O75525 346 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 TRPA1O75762 1119 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 STX17P56962 302 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 SUZ12Q15022 739 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 CHRNA2Q15822 529 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 ASIC2Q16515 512 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 MEA1Q16626 185 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PTPROQ16827 1216 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 KIAA0319Q5VV43 1072 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 NFRKBQ6P4R8 1299 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 RNF207Q6ZRF8 634 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 TRIM50Q86XT4 487 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 CCDC197Q8NCU1 140 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 RFWD2Q8NHY2 731 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 RUNDC1Q96C34 613 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 ASIC4Q96FT7 647 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 DYDC2Q96IM9 177 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PGBD1Q96JS3 809 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 HIST1H2AHQ96KK5 128 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 POP1Q99575 1024 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 HIST1H2AJQ99878 128 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 EFHD1Q9BUP0 239 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 ARMC7Q9H6L4 198 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PAG1Q9NWQ8 432 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 MOSPD1Q9UJG1 213 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 EFCAB5A4FU69 1503 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 NKTRP30414 1462 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 RASSF10A6NK89 507 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PRR23D1E9PI22 279 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 HGSO14964 777 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 RGS16O15492 202 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 SNUPNO95149 360 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 HEXAP06865 529 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 CAPN1P07384 714 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 RPSAP08865 295 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PARP1P09874 1014 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PRR23D2P0DMB1 279 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 ATF4P18848 351 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 KRT20P35900 424 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 RGS2P41220 211 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 DNM1Q05193 864 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 SPAG1Q07617 926 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PUM3Q15397 648 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 BMP2KLQ5H9B9 411 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 RCOR2Q8IZ40 523 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 KIRREL3Q8IZU9 778 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 C7orf57Q8NEG2 295 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 GINS4Q9BRT9 223 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 TBC1D23Q9NUY8 699 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PCDH10Q9P2E7 1040 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 LCMT1Q9UIC8 334 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PA2G4Q9UQ80 394 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 MCF2LO15068 1137 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 TTC4O95801 387 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 KRT6AP02538 564 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 KRT6BP04259 564 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 ALPPL2P10696 532 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 HCLS1P14317 486 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 U2AF2P26368 475 aaKnown RBP eCLIP2.98□□□□□ -1.931e-6■■■□□ 14.9
SCN1A-219ENST00000641575 KRT6CP48668 564 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PMS1P54277 932 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 GNGT1P63211 74 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 GRIK4Q16099 956 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 HLFQ16534 295 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 TTC38Q5R3I4 469 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 C8orf74Q6P047 294 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 PGM2L1Q6PCE3 622 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 LRRC69Q6ZNQ3 347 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 CCT7Q99832 543 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 C19orf44Q9H6X5 657 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 SENP2Q9HC62 589 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 NRBP2Q9NSY0 501 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 B2RBV5 119 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 H3BMM5 538 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 SURF6O75683 361 aaKnown RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 NFKB1P19838 968 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 CHKAP35790 457 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 KYAT1Q16773 422 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 DPH6Q7L8W6 267 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 ZNF467Q7Z7K2 595 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-219ENST00000641575 ARMC2Q8NEN0 867 aa2.98□□□□□ -1.93
SCN1A-219ENST00000641575 APPL2Q8NEU8 664 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms