RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 USP17L17D6RBQ6 530 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 USP17L19D6RCP7 530 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 USP17L20D6RJB6 530 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 ATP1A1P05023 1023 aaKnown RBP6.58□□□□□ -1.36
SCN1A-217ENST00000637988 GUCA1AP43080 201 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-217ENST00000637988 CRKP46108 304 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 USP17L24Q0WX57 530 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 CAPRIN1Q14444 709 aaKnown RBP6.58□□□□□ -1.36
SCN1A-217ENST00000637988 TAF1BQ53T94 588 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-217ENST00000637988 MFSD4BQ5TF39 518 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 OR6B2Q6IFH4 312 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 KRT222Q8N1A0 295 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 BANK1Q8NDB2 785 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 TSC1Q92574 1164 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 ZNF560Q96MR9 790 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 KIF2CQ99661 725 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 CARD6Q9BX69 1037 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 CALN1Q9BXU9 219 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 C6orf203Q9P0P8 240 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-217ENST00000637988 MYO10Q9HD67 2058 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 COBLO75128 1261 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 SSTR3P32745 418 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-217ENST00000637988 HUNKP57058 714 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 RHPN2Q8IUC4 686 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 VPS18Q9P253 973 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 NFKBIL1Q9UBC1 381 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-217ENST00000637988 SHANK2Q9UPX8 1470 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 JCADQ9P266 1359 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 GADD45BO75293 160 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-217ENST00000637988 GCKP35557 465 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 GPC3P51654 580 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 ERICH1Q86X53 443 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 DDX56Q9NY93 547 aaKnown RBP6.58□□□□□ -1.36
SCN1A-217ENST00000637988 PNMA6FA0A0J9YX94 578 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 H3BRJ5 948 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 SART1O43290 800 aaKnown RBP6.58□□□□□ -1.36
SCN1A-217ENST00000637988 RPLP2P05387 115 aaKnown RBP6.58□□□□□ -1.36
SCN1A-217ENST00000637988 C6orf222P0C671 652 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-217ENST00000637988 GOLGA8HP0CJ92 632 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 CHMLP26374 656 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 GTF2A2P52657 109 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 CYP4A22Q5TCH4 519 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 PODNQ7Z5L7 613 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 TRIM59Q8IWR1 403 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 KLHL7Q8IXQ5 586 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 STX19Q8N4C7 294 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 GJD4Q96KN9 370 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-217ENST00000637988 MRPL46Q9H2W6 279 aaKnown RBP6.58□□□□□ -1.36
SCN1A-217ENST00000637988 THG1LQ9NWX6 298 aaKnown RBP6.58□□□□□ -1.36
SCN1A-217ENST00000637988 STAP1Q9ULZ2 295 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 SPATA31A6Q5VVP1 1343 aa6.58□□□□□ -1.36
SCN1A-217ENST00000637988 GOLGA8JA6NMD2 632 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 LRRIQ3A6PVS8 624 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-217ENST00000637988 ANP32DO95626 131 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 PDIA3P30101 505 aaKnown RBP6.57□□□□□ -1.36
SCN1A-217ENST00000637988 KLHL40Q2TBA0 621 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 ZNF699Q32M78 642 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 RRM2BQ7LG56 351 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 MYL10Q9BUA6 226 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 DCTPP1Q9H773 170 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 ACAD9Q9H845 621 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 SLC38A7Q9NVC3 462 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 SUN2Q9UH99 717 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 KCNJ14Q9UNX9 436 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 SUPT3HB4E1H0 165 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 CIAO1O76071 339 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 PDE8BO95263 885 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 ATG16L1Q676U5 607 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 SPOPLQ6IQ16 392 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 PCGF5Q86SE9 256 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 GJA10Q969M2 543 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 NRBF2Q96F24 287 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 LGR6Q9HBX8 967 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 IMPACTQ9P2X3 320 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 PCDHA4Q9UN74 947 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 PCDHB12Q9Y5F1 795 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 DNMT1P26358 1616 aaKnown RBP6.57□□□□□ -1.36
SCN1A-217ENST00000637988 hCG_1642624A0A1W2PR95 340 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 E7EWF7 191 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 SYNCRIPO60506 623 aaKnown RBP6.57□□□□□ -1.36
SCN1A-217ENST00000637988 PPWD1Q96BP3 646 aaKnown RBP6.57□□□□□ -1.36
SCN1A-217ENST00000637988 SUCLG2Q96I99 432 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 MRPL4Q9BYD3 311 aaKnown RBP6.57□□□□□ -1.36
SCN1A-217ENST00000637988 KCNJ18B7U540 433 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 GOLGA8SH3BPF8 625 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 ATP5JP18859 108 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 EIF2AK2P19525 551 aaKnown RBP6.57□□□□□ -1.36
SCN1A-217ENST00000637988 SFNP31947 248 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 NPY2RP49146 381 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 NLRP12P59046 1061 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 KCNH2Q12809 1159 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 KCNJ12Q14500 433 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 GPKOWQ92917 476 aaPredicted RBP eCLIP6.57□□□□□ -1.36
SCN1A-217ENST00000637988 GLT1D1Q96MS3 346 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 NLRC4Q9NPP4 1024 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 CAND2O75155 1236 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 APOA4P06727 396 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 MED21Q13503 144 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 LAMB3Q13751 1172 aa6.57□□□□□ -1.36
SCN1A-217ENST00000637988 MORC3Q14149 939 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms