RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 RMDN3Q96TC7 470 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 CRACR2AQ9BSW2 395 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 ASTN1O14525 1302 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 MUTP22033 750 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 CYLC1P35663 651 aaPredicted RBP17.24■□□□□ 0.35
CLN3-251ENST00000636853 BMT2Q1RMZ1 405 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 ZC2HC1CQ53FD0 456 aaPredicted RBP17.24■□□□□ 0.35
CLN3-251ENST00000636853 DLK2Q6UY11 383 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 NIPA1Q7RTP0 329 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 GPC2Q8N158 579 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 PARVGQ9HBI0 331 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 OLFML3Q9NRN5 406 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 RNF146Q9NTX7 359 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 GUCA1BQ9UMX6 200 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 PLAGL2Q9UPG8 496 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 FRMPD4Q14CM0 1322 aa17.24■□□□□ 0.35
CLN3-251ENST00000636853 RLFQ13129 1914 aa17.23■□□□□ 0.35
CLN3-251ENST00000636853 LRRC53A6NM62 1247 aa17.23■□□□□ 0.35
CLN3-251ENST00000636853 PDXKO00764 312 aa17.23■□□□□ 0.35
CLN3-251ENST00000636853 CLIC2O15247 247 aa17.23■□□□□ 0.35
CLN3-251ENST00000636853 CALUO43852 315 aaPredicted RBP17.23■□□□□ 0.35
CLN3-251ENST00000636853 APBA1Q02410 837 aa17.23■□□□□ 0.35
CLN3-251ENST00000636853 BAATQ14032 418 aaPredicted RBP17.23■□□□□ 0.35
CLN3-251ENST00000636853 KSR1Q8IVT5 923 aa17.23■□□□□ 0.35
CLN3-251ENST00000636853 BAP1Q92560 729 aa17.23■□□□□ 0.35
CLN3-251ENST00000636853 PXMP2Q9NR77 195 aa17.23■□□□□ 0.35
CLN3-251ENST00000636853 MAP3K20Q9NYL2 800 aaKnown RBP17.23■□□□□ 0.35
CLN3-251ENST00000636853 ZHX1Q9UKY1 873 aaPredicted RBP17.23■□□□□ 0.35
CLN3-251ENST00000636853 SAMM50Q9Y512 469 aa17.23■□□□□ 0.35
CLN3-251ENST00000636853 PHIPQ8WWQ0 1821 aa17.23■□□□□ 0.35
CLN3-251ENST00000636853 SSC5DA1L4H1 1573 aa17.23■□□□□ 0.35
CLN3-251ENST00000636853 LMNB1P20700 586 aa17.23■□□□□ 0.35
CLN3-251ENST00000636853 CYP27A1Q02318 531 aa17.23■□□□□ 0.35
CLN3-251ENST00000636853 CACNA2D4Q7Z3S7 1137 aa17.23■□□□□ 0.35
CLN3-251ENST00000636853 CCDC170Q8IYT3 715 aa17.23■□□□□ 0.35
CLN3-251ENST00000636853 PDCD2LQ9BRP1 358 aa17.23■□□□□ 0.35
CLN3-251ENST00000636853 LSM14BQ9BX40 385 aaKnown RBP17.23■□□□□ 0.35
CLN3-251ENST00000636853 NLRC4Q9NPP4 1024 aa17.23■□□□□ 0.35
CLN3-251ENST00000636853 TYW1Q9NV66 732 aaKnown RBP17.23■□□□□ 0.35
CLN3-251ENST00000636853 ARHGAP20Q9P2F6 1191 aa17.23■□□□□ 0.35
CLN3-251ENST00000636853 ARHGEF35A5YM69 484 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 FDX1P10109 184 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 HNRNPH3P31942 346 aaKnown RBP17.22■□□□□ 0.35
CLN3-251ENST00000636853 KRT83P78385 493 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 CDK17Q00537 523 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 GABPB1Q06547 395 aaPredicted RBP17.22■□□□□ 0.35
CLN3-251ENST00000636853 KCNH2Q12809 1159 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 ARHGEF16Q5VV41 709 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 SNRNP48Q6IEG0 339 aaKnown RBP17.22■□□□□ 0.35
CLN3-251ENST00000636853 MAEAQ7L5Y9 396 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 KIAA1328Q86T90 577 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 REPS2Q8NFH8 660 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 MYH11P35749 1972 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 RCCD1A6NED2 376 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 EIF3CLB5ME19 914 aaKnown RBP17.22■□□□□ 0.35
CLN3-251ENST00000636853 TGFB1I1O43294 461 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 ATP9AO75110 1047 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 AKAP3O75969 853 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 NOL4O94818 638 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 NR3C1P04150 777 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 P4HBP07237 508 aaKnown RBP17.22■□□□□ 0.35
CLN3-251ENST00000636853 DSG3P32926 999 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 CASP4P49662 377 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 PPP2R3AQ06190 1150 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 NEK9Q8TD19 979 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 CCDC42Q96M95 316 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 FIZ1Q96SL8 496 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 EIF3CQ99613 913 aaKnown RBP17.22■□□□□ 0.35
CLN3-251ENST00000636853 CGNQ9P2M7 1197 aaKnown RBP17.22■□□□□ 0.35
CLN3-251ENST00000636853 ARMCX3Q9UH62 379 aaPredicted RBP17.22■□□□□ 0.35
CLN3-251ENST00000636853 FAM184BQ9ULE4 1060 aa17.22■□□□□ 0.35
CLN3-251ENST00000636853 ZMYM2Q9UBW7 1377 aa17.21■□□□□ 0.35
CLN3-251ENST00000636853 TESPA1A2RU30 521 aaPredicted RBP17.21■□□□□ 0.35
CLN3-251ENST00000636853 CTAGE9A4FU28 777 aa17.21■□□□□ 0.35
CLN3-251ENST00000636853 TADA3O75528 432 aa17.21■□□□□ 0.35
CLN3-251ENST00000636853 CCDC122Q5T0U0 273 aa17.21■□□□□ 0.35
CLN3-251ENST00000636853 PDXDC1Q6P996 788 aa17.21■□□□□ 0.35
CLN3-251ENST00000636853 SAMD3Q8N6K7 520 aa17.21■□□□□ 0.35
CLN3-251ENST00000636853 C12orf42Q96LP6 360 aa17.21■□□□□ 0.35
CLN3-251ENST00000636853 C19orf81C9J6K1 198 aa17.21■□□□□ 0.34
CLN3-251ENST00000636853 ZNF263O14978 683 aa17.21■□□□□ 0.34
CLN3-251ENST00000636853 DDNO94850 711 aaPredicted RBP17.21■□□□□ 0.34
CLN3-251ENST00000636853 IPO7O95373 1038 aaKnown RBP17.21■□□□□ 0.34
CLN3-251ENST00000636853 ZNF131P52739 623 aa17.21■□□□□ 0.34
CLN3-251ENST00000636853 COG2Q14746 738 aa17.21■□□□□ 0.34
CLN3-251ENST00000636853 TMEM132BQ14DG7 1078 aa17.21■□□□□ 0.34
CLN3-251ENST00000636853 ODR4Q5SWX8 454 aa17.21■□□□□ 0.34
CLN3-251ENST00000636853 TRMT1LQ7Z2T5 733 aaKnown RBP17.21■□□□□ 0.34
CLN3-251ENST00000636853 FRMD5Q7Z6J6 570 aa17.21■□□□□ 0.34
CLN3-251ENST00000636853 FAM178BQ8IXR5 827 aa17.21■□□□□ 0.34
CLN3-251ENST00000636853 JAKMIP2Q96AA8 810 aa17.21■□□□□ 0.34
CLN3-251ENST00000636853 SH2D3AQ9BRG2 576 aa17.21■□□□□ 0.34
CLN3-251ENST00000636853 LACRTQ9GZZ8 138 aa17.21■□□□□ 0.34
CLN3-251ENST00000636853 HAUS4Q9H6D7 363 aa17.21■□□□□ 0.34
CLN3-251ENST00000636853 ZSWIM4Q9H7M6 989 aa17.21■□□□□ 0.34
CLN3-251ENST00000636853 PNMA2Q9UL42 364 aa17.21■□□□□ 0.34
CLN3-251ENST00000636853 ZNF214Q9UL59 606 aaPredicted RBP17.21■□□□□ 0.34
CLN3-251ENST00000636853 DICER1Q9UPY3 1922 aaKnown RBP17.21■□□□□ 0.34
CLN3-251ENST00000636853 EIF3DO15371 548 aaKnown RBP eCLIP17.2■□□□□ 0.34
CLN3-251ENST00000636853 HIP1RO75146 1068 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms