RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 USP34Q70CQ2 3546 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 RRN3P2A6NIE6 340 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 OPLAHO14841 1288 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 DHX16O60231 1041 aaKnown RBP8.46□□□□□ -1.06
CIITA-214ENST00000636238 KDM4AO75164 1064 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 CHRNA1P02708 482 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 ITGB1P05556 798 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 MYCLP12524 364 aaPredicted RBP8.46□□□□□ -1.06
CIITA-214ENST00000636238 DDIT3P35638 169 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 SP2Q02086 613 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 MGAT3Q09327 533 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 ST3GAL1Q11201 340 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 LPIN1Q14693 890 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 CLUL1Q15846 466 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 FBXO47Q5MNV8 452 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 ODR4Q5SWX8 454 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 IER5Q5VY09 327 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 RAB11FIP4Q86YS3 637 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 TEX2Q8IWB9 1127 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 LMBR1Q8WVP7 490 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 RIPOR3Q96MK2 946 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 NECTIN4Q96NY8 510 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 ZSCAN10Q96SZ4 725 aaPredicted RBP8.46□□□□□ -1.06
CIITA-214ENST00000636238 ZKSCAN3Q9BRR0 538 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 IGFLR1Q9H665 355 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 CNNM2Q9H8M5 875 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 SENP2Q9HC62 589 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 SETD4Q9NVD3 440 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 CHMP5Q9NZZ3 219 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 ZSWIM5Q9P217 1185 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 NR2E1Q9Y466 385 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 PCDHA1Q9Y5I3 950 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 BAZ2BQ9UIF8 2168 aaKnown RBP8.46□□□□□ -1.06
CIITA-214ENST00000636238 TRIOO75962 3097 aa8.46□□□□□ -1.06
CIITA-214ENST00000636238 CFAP54Q96N23 3096 aa8.45□□□□□ -1.06
CIITA-214ENST00000636238 CARNS1A5YM72 827 aa8.45□□□□□ -1.06
CIITA-214ENST00000636238 LINC01565O15544 149 aa8.45□□□□□ -1.06
CIITA-214ENST00000636238 GHRP10912 638 aa8.45□□□□□ -1.06
CIITA-214ENST00000636238 CCT2P78371 535 aaKnown RBP8.45□□□□□ -1.06
CIITA-214ENST00000636238 ARHGAP4P98171 946 aa8.45□□□□□ -1.06
CIITA-214ENST00000636238 NLRX1Q86UT6 975 aa8.45□□□□□ -1.06
CIITA-214ENST00000636238 NME8Q8N427 588 aa8.45□□□□□ -1.06
CIITA-214ENST00000636238 ENAHQ8N8S7 591 aaPredicted RBP8.45□□□□□ -1.06
CIITA-214ENST00000636238 POF1BQ8WVV4 589 aa8.45□□□□□ -1.06
CIITA-214ENST00000636238 KRT23Q9C075 422 aa8.45□□□□□ -1.06
CIITA-214ENST00000636238 SEMA4AQ9H3S1 761 aa8.45□□□□□ -1.06
CIITA-214ENST00000636238 TLE6Q9H808 572 aa8.45□□□□□ -1.06
CIITA-214ENST00000636238 SH2B1Q9NRF2 756 aaPredicted RBP8.45□□□□□ -1.06
CIITA-214ENST00000636238 ERAP1Q9NZ08 941 aa8.45□□□□□ -1.06
CIITA-214ENST00000636238 BRPF3Q9ULD4 1205 aa8.45□□□□□ -1.06
CIITA-214ENST00000636238 PCDHB12Q9Y5F1 795 aa8.45□□□□□ -1.06
CIITA-214ENST00000636238 MRPL42Q9Y6G3 142 aaKnown RBP8.45□□□□□ -1.06
CIITA-214ENST00000636238 MICAL3Q7RTP6 2002 aa8.45□□□□□ -1.06
CIITA-214ENST00000636238 KDM3AQ9Y4C1 1321 aa8.45□□□□□ -1.06
CIITA-214ENST00000636238 KLF18A0A0U1RQI7 1052 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 PRR23AA6NEV1 266 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 KLRF2D3W0D1 207 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 M0QZ92 97 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 SH2B2O14492 632 aaPredicted RBP8.44□□□□□ -1.06
CIITA-214ENST00000636238 IFIT3O14879 490 aaKnown RBP8.44□□□□□ -1.06
CIITA-214ENST00000636238 MAFGO15525 162 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 GLP2RO95838 553 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 SCG2P13521 617 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 NRIP1P48552 1158 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 CLCN5P51795 746 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 VCPP55072 806 aaKnown RBP8.44□□□□□ -1.06
CIITA-214ENST00000636238 MRPS6P82932 125 aaKnown RBP8.44□□□□□ -1.06
CIITA-214ENST00000636238 PPFIA1Q13136 1202 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 MTMR3Q13615 1198 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 DUSP6Q16828 381 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 FOXD4L5Q5VV16 416 aaPredicted RBP8.44□□□□□ -1.06
CIITA-214ENST00000636238 PCNX4Q63HM2 1172 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 KLHL23Q8NBE8 558 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 IGDCC4Q8TDY8 1250 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 FOXD4L4Q8WXT5 416 aaPredicted RBP8.44□□□□□ -1.06
CIITA-214ENST00000636238 RSPH1Q8WYR4 309 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 GPRASP2Q96D09 838 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 UBAC1Q9BSL1 405 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 AGXT2Q9BYV1 514 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 SMARCAD1Q9H4L7 1026 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 RIOX1Q9H6W3 641 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 NCOA5Q9HCD5 579 aaKnown RBP8.44□□□□□ -1.06
CIITA-214ENST00000636238 NGRNQ9NPE2 291 aaKnown RBP8.44□□□□□ -1.06
CIITA-214ENST00000636238 TLR9Q9NR96 1032 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 C1orf112Q9NSG2 853 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 TUBE1Q9UJT0 475 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 SORCS3Q9UPU3 1222 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 SMC3Q9UQE7 1217 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 RALGAPA2Q2PPJ7 1873 aa8.44□□□□□ -1.06
CIITA-214ENST00000636238 PNMA6FA0A0J9YX94 578 aa8.43□□□□□ -1.06
CIITA-214ENST00000636238 PALM3A6NDB9 673 aaPredicted RBP8.43□□□□□ -1.06
CIITA-214ENST00000636238 PIK3CDO00329 1044 aa8.43□□□□□ -1.06
CIITA-214ENST00000636238 FSCN2O14926 492 aa8.43□□□□□ -1.06
CIITA-214ENST00000636238 PFKFB2O60825 505 aa8.43□□□□□ -1.06
CIITA-214ENST00000636238 DNAJB1P25685 340 aa8.43□□□□□ -1.06
CIITA-214ENST00000636238 PDIA3P30101 505 aaKnown RBP8.43□□□□□ -1.06
CIITA-214ENST00000636238 GTF2F1P35269 517 aaKnown RBP eCLIP8.43□□□□□ -1.06
CIITA-214ENST00000636238 PPM1AP35813 382 aa8.43□□□□□ -1.06
CIITA-214ENST00000636238 MRPS9P82933 396 aaKnown RBP8.43□□□□□ -1.06
CIITA-214ENST00000636238 PLCB3Q01970 1234 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms