RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 PPP6R2O75170 966 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 ADKP55263 362 aaKnown RBP6.43□□□□□ -1.38
SCN1A-212ENST00000636194 CSTF3Q12996 717 aaKnown RBP6.43□□□□□ -1.38
SCN1A-212ENST00000636194 MDM1Q8TC05 714 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.43□□□□□ -1.38
SCN1A-212ENST00000636194 BRF1Q92994 677 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 METTL14Q9HCE5 456 aaKnown RBP6.43□□□□□ -1.38
SCN1A-212ENST00000636194 POLIQ9UNA4 740 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 NCAPD3P42695 1498 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 SYNJ2BP-COX16A0A087WUM0 186 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 SPAG7O75391 227 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 FYNP06241 537 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 NCF2P19878 526 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-212ENST00000636194 ANXA11P50995 505 aaKnown RBP6.43□□□□□ -1.38
SCN1A-212ENST00000636194 RARSP54136 660 aaKnown RBP6.43□□□□□ -1.38
SCN1A-212ENST00000636194 LAMB3Q13751 1172 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 USP39Q53GS9 565 aaKnown RBP6.43□□□□□ -1.38
SCN1A-212ENST00000636194 GADL1Q6ZQY3 521 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 CCDC177Q9NQR7 707 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-212ENST00000636194 COX16Q9P0S2 106 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 GGA1Q9UJY5 639 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 CNPY2Q9Y2B0 182 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 UBE4BO95155 1302 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 KDRP35968 1356 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 TSPAN9O75954 239 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 PDE9AO76083 593 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 MSR1P21757 451 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 STAT2P52630 851 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 LRMPQ12912 555 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 SLC30A9Q6PML9 568 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 OOSP2Q86WS3 158 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 HOMEZQ8IX15 550 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 SCFD1Q8WVM8 642 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 CALR3Q96L12 384 aaKnown RBP6.43□□□□□ -1.38
SCN1A-212ENST00000636194 SYBUQ9NX95 663 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 STK17AQ9UEE5 414 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 SEPT3Q9UH03 358 aa6.43□□□□□ -1.38
SCN1A-212ENST00000636194 MYO1FO00160 1098 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 ATP5HO75947 161 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 GIMAP6Q6P9H5 292 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 CHST3Q7LGC8 479 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 PLD3Q8IV08 490 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 BBS7Q8IWZ6 715 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 CCDC197Q8NCU1 140 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 DCUN1D1Q96GG9 259 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 CNBD2Q96M20 576 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 CCDC87Q9NVE4 849 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 PKD2L2Q9NZM6 624 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 TMCC3Q9ULS5 477 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 MRPL11Q9Y3B7 192 aaKnown RBP6.42□□□□□ -1.38
SCN1A-212ENST00000636194 NPHP3Q7Z494 1330 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 CCDC189A1A4V9 331 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 IQCA1LA6NCM1 817 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 ALDH1A1P00352 501 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 BTN3A2P78410 334 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 BEND3Q5T5X7 828 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 FAM45BPQ6NSW5 357 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 LMBR1LQ6UX01 489 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 MAEAQ7L5Y9 396 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 ARHGEF25Q86VW2 580 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 TPH2Q8IWU9 490 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 CCDC51Q96ER9 411 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 PI4K2BG5E9Z4 385 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 PIK3R2O00459 728 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 CSPG5O95196 566 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 GHRP10912 638 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 CCT8P50990 548 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 PSMC6P62333 389 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 PPIDQ08752 370 aaKnown RBP6.42□□□□□ -1.38
SCN1A-212ENST00000636194 AP1B1Q10567 949 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 DDB1Q16531 1140 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 RARS2Q5T160 578 aaKnown RBP6.42□□□□□ -1.38
SCN1A-212ENST00000636194 C10orf76Q5T2E6 689 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 ZNF438Q7Z4V0 828 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 ZNF654Q8IZM8 581 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 PI4K2BQ8TCG2 481 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 ACAP3Q96P50 834 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 GID8Q9NWU2 228 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 VAV3Q9UKW4 847 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 EVPLQ92817 2033 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 TESPA1A2RU30 521 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-212ENST00000636194 SF3B3Q15393 1217 aaKnown RBP6.42□□□□□ -1.38
SCN1A-212ENST00000636194 HABP4Q5JVS0 413 aaKnown RBP6.42□□□□□ -1.38
SCN1A-212ENST00000636194 CC2D1AQ6P1N0 951 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-212ENST00000636194 CATSPER3Q86XQ3 398 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 RFX6Q8HWS3 928 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 KLHL7Q8IXQ5 586 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 CPXCR1Q8N123 301 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 PCDHGA4Q9Y5G9 962 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 TTC41PQ6P2S7 1318 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 KIAA0100Q14667 2235 aaKnown RBP6.42□□□□□ -1.38
SCN1A-212ENST00000636194 K7ENM7 598 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 KHDRBS3O75525 346 aaKnown RBP6.42□□□□□ -1.38
SCN1A-212ENST00000636194 KRT1P04264 644 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 MDM2Q00987 491 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-212ENST00000636194 IKBIPQ70UQ0 350 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.42□□□□□ -1.38
SCN1A-212ENST00000636194 ZNF513Q8N8E2 541 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-212ENST00000636194 MLKLQ8NB16 471 aa6.42□□□□□ -1.38
SCN1A-212ENST00000636194 ICA1LQ8NDH6 482 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms