RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 MSH4O15457 936 aa20.46■□□□□ 0.87
CLN3-243ENST00000635973 GTPBP6O43824 516 aaPredicted RBP20.46■□□□□ 0.87
CLN3-243ENST00000635973 MARCH6O60337 910 aa20.46■□□□□ 0.87
CLN3-243ENST00000635973 NBNO60934 754 aa20.46■□□□□ 0.87
CLN3-243ENST00000635973 CXCL10P02778 98 aa20.46■□□□□ 0.87
CLN3-243ENST00000635973 WDR5P61964 334 aaKnown RBP20.46■□□□□ 0.87
CLN3-243ENST00000635973 PPP4R3AQ6IN85 833 aa20.46■□□□□ 0.87
CLN3-243ENST00000635973 SERINC5Q86VE9 423 aa20.46■□□□□ 0.87
CLN3-243ENST00000635973 TBC1D22BQ9NU19 505 aa20.46■□□□□ 0.87
CLN3-243ENST00000635973 PTPRSQ13332 1948 aa20.45■□□□□ 0.86
CLN3-243ENST00000635973 RSPH10B2B2RC85 870 aa20.45■□□□□ 0.86
CLN3-243ENST00000635973 SLC37A4O43826 429 aa20.45■□□□□ 0.86
CLN3-243ENST00000635973 GAS7O60861 476 aa20.45■□□□□ 0.86
CLN3-243ENST00000635973 RSPH10BP0C881 870 aa20.45■□□□□ 0.86
CLN3-243ENST00000635973 BECN1Q14457 450 aa20.45■□□□□ 0.86
CLN3-243ENST00000635973 TJAP1Q5JTD0 557 aa20.45■□□□□ 0.86
CLN3-243ENST00000635973 LRCH2Q5VUJ6 765 aa20.45■□□□□ 0.86
CLN3-243ENST00000635973 ARNTL2Q8WYA1 636 aa20.45■□□□□ 0.86
CLN3-243ENST00000635973 SEPT1Q8WYJ6 367 aa20.45■□□□□ 0.86
CLN3-243ENST00000635973 THEGQ9P2T0 379 aa20.45■□□□□ 0.86
CLN3-243ENST00000635973 LGR5O75473 907 aa20.44■□□□□ 0.86
CLN3-243ENST00000635973 TCF7P36402 384 aaPredicted RBP20.44■□□□□ 0.86
CLN3-243ENST00000635973 ACTR2P61160 394 aa20.44■□□□□ 0.86
CLN3-243ENST00000635973 GPNMBQ14956 572 aa20.44■□□□□ 0.86
CLN3-243ENST00000635973 TRIM71Q2Q1W2 868 aaKnown RBP20.44■□□□□ 0.86
CLN3-243ENST00000635973 SPRYD3Q8NCJ5 442 aa20.44■□□□□ 0.86
CLN3-243ENST00000635973 WNT8BQ93098 351 aa20.44■□□□□ 0.86
CLN3-243ENST00000635973 MBOAT7Q96N66 472 aa20.44■□□□□ 0.86
CLN3-243ENST00000635973 TEKT3Q9BXF9 490 aa20.44■□□□□ 0.86
CLN3-243ENST00000635973 RNPEPQ9H4A4 650 aa20.44■□□□□ 0.86
CLN3-243ENST00000635973 PRDM6Q9NQX0 595 aa20.44■□□□□ 0.86
CLN3-243ENST00000635973 TREHO43280 583 aa20.43■□□□□ 0.86
CLN3-243ENST00000635973 NEMFO60524 1076 aa20.43■□□□□ 0.86
CLN3-243ENST00000635973 U2AF2P26368 475 aaKnown RBP eCLIP20.43■□□□□ 0.86
CLN3-243ENST00000635973 KRT76Q01546 638 aa20.43■□□□□ 0.86
CLN3-243ENST00000635973 TAP1Q03518 808 aa20.43■□□□□ 0.86
CLN3-243ENST00000635973 HIC1Q14526 733 aa20.43■□□□□ 0.86
CLN3-243ENST00000635973 SKIV2LQ15477 1246 aaKnown RBP20.43■□□□□ 0.86
CLN3-243ENST00000635973 POTEDQ86YR6 584 aa20.43■□□□□ 0.86
CLN3-243ENST00000635973 ATXN2LQ8WWM7 1075 aaKnown RBP20.43■□□□□ 0.86
CLN3-243ENST00000635973 RIT2Q99578 217 aa20.43■□□□□ 0.86
CLN3-243ENST00000635973 SETD4Q9NVD3 440 aa20.43■□□□□ 0.86
CLN3-243ENST00000635973 TELO2Q9Y4R8 837 aa20.43■□□□□ 0.86
CLN3-243ENST00000635973 CHD9Q3L8U1 2897 aa20.42■□□□□ 0.86
CLN3-243ENST00000635973 CHMP2AO43633 222 aa20.42■□□□□ 0.86
CLN3-243ENST00000635973 MCM7P33993 719 aa20.42■□□□□ 0.86
CLN3-243ENST00000635973 TRAPPC10P48553 1259 aa20.42■□□□□ 0.86
CLN3-243ENST00000635973 DEFB103AP81534 67 aa20.42■□□□□ 0.86
CLN3-243ENST00000635973 TTC38Q5R3I4 469 aa20.42■□□□□ 0.86
CLN3-243ENST00000635973 MIS18BP1Q6P0N0 1132 aa20.42■□□□□ 0.86
CLN3-243ENST00000635973 TRIM50Q86XT4 487 aa20.42■□□□□ 0.86
CLN3-243ENST00000635973 ETNPPLQ8TBG4 499 aa20.42■□□□□ 0.86
CLN3-243ENST00000635973 GLG1Q92896 1179 aa20.42■□□□□ 0.86
CLN3-243ENST00000635973 SLC5A5Q92911 643 aa20.42■□□□□ 0.86
CLN3-243ENST00000635973 GJA10Q969M2 543 aa20.42■□□□□ 0.86
CLN3-243ENST00000635973 AZI2Q9H6S1 392 aa20.42■□□□□ 0.86
CLN3-243ENST00000635973 SAMM50Q9Y512 469 aa20.42■□□□□ 0.86
CLN3-243ENST00000635973 TTC28Q96AY4 2481 aa20.42■□□□□ 0.86
CLN3-243ENST00000635973 GSTTP1A0A1W2PQM5 241 aa20.41■□□□□ 0.86
CLN3-243ENST00000635973 RFXAPO00287 272 aa20.41■□□□□ 0.86
CLN3-243ENST00000635973 BACH1O14867 736 aa20.41■□□□□ 0.86
CLN3-243ENST00000635973 DHX15O43143 795 aaKnown RBP20.41■□□□□ 0.86
CLN3-243ENST00000635973 CAND2O75155 1236 aa20.41■□□□□ 0.86
CLN3-243ENST00000635973 BAG4O95429 457 aaKnown RBP20.41■□□□□ 0.86
CLN3-243ENST00000635973 CCNE2O96020 404 aa20.41■□□□□ 0.86
CLN3-243ENST00000635973 AMHP03971 560 aa20.41■□□□□ 0.86
CLN3-243ENST00000635973 SYT1P21579 422 aa20.41■□□□□ 0.86
CLN3-243ENST00000635973 CALCRLQ16602 461 aa20.41■□□□□ 0.86
CLN3-243ENST00000635973 ZNF746Q6NUN9 644 aaPredicted RBP20.41■□□□□ 0.86
CLN3-243ENST00000635973 TMCO2Q7Z6W1 182 aaPredicted RBP20.41■□□□□ 0.86
CLN3-243ENST00000635973 RAD9AQ99638 391 aa20.41■□□□□ 0.86
CLN3-243ENST00000635973 TBX3O15119 743 aa20.4■□□□□ 0.86
CLN3-243ENST00000635973 GJB5O95377 273 aa20.4■□□□□ 0.86
CLN3-243ENST00000635973 CTSHP09668 335 aa20.4■□□□□ 0.86
CLN3-243ENST00000635973 MARK3P27448 753 aa20.4■□□□□ 0.86
CLN3-243ENST00000635973 MRPS5P82675 430 aaKnown RBP20.4■□□□□ 0.86
CLN3-243ENST00000635973 FAM117BQ6P1L5 589 aa20.4■□□□□ 0.86
CLN3-243ENST00000635973 TRAF7Q6Q0C0 670 aa20.4■□□□□ 0.86
CLN3-243ENST00000635973 MICAL3Q7RTP6 2002 aa20.4■□□□□ 0.86
CLN3-243ENST00000635973 SMAP1Q8IYB5 467 aaPredicted RBP20.4■□□□□ 0.86
CLN3-243ENST00000635973 SLFN12Q8IYM2 578 aa20.4■□□□□ 0.86
CLN3-243ENST00000635973 DBF4BQ8NFT6 615 aa20.4■□□□□ 0.86
CLN3-243ENST00000635973 SEPT8Q92599 483 aa20.4■□□□□ 0.86
CLN3-243ENST00000635973 NRCAMQ92823 1304 aa20.4■□□□□ 0.86
CLN3-243ENST00000635973 FAM20AQ96MK3 541 aa20.4■□□□□ 0.86
CLN3-243ENST00000635973 SMARCAD1Q9H4L7 1026 aa20.4■□□□□ 0.86
CLN3-243ENST00000635973 KCNMB3Q9NPA1 279 aa20.4■□□□□ 0.86
CLN3-243ENST00000635973 WDR64B1ANS9 1081 aa20.39■□□□□ 0.85
CLN3-243ENST00000635973 WNT7AO00755 349 aa20.39■□□□□ 0.85
CLN3-243ENST00000635973 HOXC8P31273 242 aa20.39■□□□□ 0.85
CLN3-243ENST00000635973 MBTPS1Q14703 1052 aa20.39■□□□□ 0.85
CLN3-243ENST00000635973 ZNF174Q15697 407 aa20.39■□□□□ 0.85
CLN3-243ENST00000635973 FAM160B1Q5W0V3 765 aa20.39■□□□□ 0.85
CLN3-243ENST00000635973 FERMT3Q86UX7 667 aa20.39■□□□□ 0.85
CLN3-243ENST00000635973 ASB2Q96Q27 587 aa20.39■□□□□ 0.85
CLN3-243ENST00000635973 ERAP1Q9NZ08 941 aa20.39■□□□□ 0.85
CLN3-243ENST00000635973 STX6O43752 255 aa20.38■□□□□ 0.85
CLN3-243ENST00000635973 PSMD10O75832 226 aa20.38■□□□□ 0.85
CLN3-243ENST00000635973 PSAPP07602 524 aa20.38■□□□□ 0.85
CLN3-243ENST00000635973 JAK3P52333 1124 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms