RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 TMEM59LQ9UK28 342 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 FAM196BA6NMK8 535 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 MEIS1O00470 390 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 MSH4O15457 936 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 AKAP3O75969 853 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 NDUFB10O96000 172 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 MYBP10242 640 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 ACTN1P12814 892 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 SLC9A1P19634 815 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 ARID5AQ03989 594 aa14□□□□□ -0.17
LINC00540-203ENST00000631321 ASTN1O14525 1302 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 GTPBP10A4D1E9 387 aaKnown RBP13.99□□□□□ -0.17
LINC00540-203ENST00000631321 SPDYE3A6NKU9 549 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 G3V3G9 751 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 OPLAHO14841 1288 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 EYA4O95677 639 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 RPL13P26373 211 aaKnown RBP13.99□□□□□ -0.17
LINC00540-203ENST00000631321 PAK2Q13177 524 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 DCAF8Q5TAQ9 597 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 STRIP1Q5VSL9 837 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 SIX2Q9NPC8 291 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 OLFML3Q9NRN5 406 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 PIK3CDO00329 1044 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 RAD21O60216 631 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 HSF2BPO75031 334 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 NR3C1P04150 777 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 XRCC5P13010 732 aaKnown RBP13.99□□□□□ -0.17
LINC00540-203ENST00000631321 HMGB2P26583 209 aaKnown RBP13.99□□□□□ -0.17
LINC00540-203ENST00000631321 CACNB3P54284 484 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 JAM2P57087 298 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 TCP10Q12799 353 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 SLC15A2Q16348 729 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 NFIL3Q16649 462 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 IFI16Q16666 785 aaKnown RBP13.99□□□□□ -0.17
LINC00540-203ENST00000631321 NLGN1Q8N2Q7 840 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 LRRC57Q8N9N7 239 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 EIF1ADQ8N9N8 165 aaKnown RBP13.99□□□□□ -0.17
LINC00540-203ENST00000631321 USP38Q8NB14 1042 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 TRERF1Q96PN7 1200 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 SYNPO2Q9UMS6 1093 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 PCDHAC2Q9Y5I4 1007 aa13.99□□□□□ -0.17
LINC00540-203ENST00000631321 HEXIM1O94992 359 aaKnown RBP13.98□□□□□ -0.17
LINC00540-203ENST00000631321 GAP43P17677 238 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 PDE6BP35913 854 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 CARSP49589 748 aaKnown RBP13.98□□□□□ -0.17
LINC00540-203ENST00000631321 ABCB5Q2M3G0 1257 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 DACT2Q5SW24 774 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 IQCKQ8N0W5 287 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 RBM46Q8TBY0 533 aaKnown RBP13.98□□□□□ -0.17
LINC00540-203ENST00000631321 SLC35C1Q96A29 364 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 BORCS6Q96GS4 357 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 MASTLQ96GX5 879 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 SPAG5Q96R06 1193 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 EIF2AK1Q9BQI3 630 aaKnown RBP13.98□□□□□ -0.17
LINC00540-203ENST00000631321 RUSC1Q9BVN2 902 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 KCNQ5Q9NR82 932 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 NAGPAQ9UK23 515 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 TRPC5Q9UL62 973 aaPredicted RBP13.98□□□□□ -0.17
LINC00540-203ENST00000631321 AFF2P51816 1311 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 EIF3DO15371 548 aaKnown RBP eCLIP13.98□□□□□ -0.17
LINC00540-203ENST00000631321 ZBTB48P10074 688 aaPredicted RBP13.98□□□□□ -0.17
LINC00540-203ENST00000631321 SNAP25P60880 206 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 RPS6KA1Q15418 735 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.98□□□□□ -0.17
LINC00540-203ENST00000631321 PBKQ96KB5 322 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 TRIM34Q9BYJ4 488 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 TMX4Q9H1E5 349 aaPredicted RBP13.98□□□□□ -0.17
LINC00540-203ENST00000631321 BHMT2Q9H2M3 363 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 EPB41L5Q9HCM4 733 aa13.98□□□□□ -0.17
LINC00540-203ENST00000631321 ATRNL1Q5VV63 1379 aa13.97□□□□□ -0.17
LINC00540-203ENST00000631321 A0A0A6YYK5 440 aaPredicted RBP13.97□□□□□ -0.17
LINC00540-203ENST00000631321 RSPH10B2B2RC85 870 aa13.97□□□□□ -0.17
LINC00540-203ENST00000631321 KIF4AO95239 1232 aa13.97□□□□□ -0.17
LINC00540-203ENST00000631321 RSPH10BP0C881 870 aa13.97□□□□□ -0.17
LINC00540-203ENST00000631321 BMP3P12645 472 aa13.97□□□□□ -0.17
LINC00540-203ENST00000631321 IRAK1P51617 712 aa13.97□□□□□ -0.17
LINC00540-203ENST00000631321 TNNC1P63316 161 aa13.97□□□□□ -0.17
LINC00540-203ENST00000631321 SKOR1P84550 965 aa13.97□□□□□ -0.17
LINC00540-203ENST00000631321 GUCY2DQ02846 1103 aa13.97□□□□□ -0.17
LINC00540-203ENST00000631321 TTMPQ5BVD1 217 aa13.97□□□□□ -0.17
LINC00540-203ENST00000631321 KIAA0825Q8IV33 1275 aa13.97□□□□□ -0.17
LINC00540-203ENST00000631321 CD302Q8IX05 232 aa13.97□□□□□ -0.17
LINC00540-203ENST00000631321 HSD17B14Q9BPX1 270 aa13.97□□□□□ -0.17
LINC00540-203ENST00000631321 DBNDD1Q9H9R9 158 aa13.97□□□□□ -0.17
LINC00540-203ENST00000631321 SERPINA10Q9UK55 444 aa13.97□□□□□ -0.17
LINC00540-203ENST00000631321 INTUQ9ULD6 942 aa13.97□□□□□ -0.17
LINC00540-203ENST00000631321 RABGAP1Q9Y3P9 1069 aa13.97□□□□□ -0.17
LINC00540-203ENST00000631321 IGLV3-22A0A075B6J6 115 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 BHMG1C9JSJ3 638 aaPredicted RBP13.96□□□□□ -0.17
LINC00540-203ENST00000631321 EML1O00423 815 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 TBCAO75347 108 aaKnown RBP13.96□□□□□ -0.17
LINC00540-203ENST00000631321 FLOT1O75955 427 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 GFPT2O94808 682 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 USH1GQ495M9 461 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 ALKBH5Q6P6C2 394 aaKnown RBP13.96□□□□□ -0.17
LINC00540-203ENST00000631321 ACTRT1Q8TDG2 376 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 WHAMMQ8TF30 809 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 SCFD2Q8WU76 684 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 CASKIN2Q8WXE0 1202 aa13.96□□□□□ -0.17
LINC00540-203ENST00000631321 TAF4BQ92750 862 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms