RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 TRPV6Q9H1D0 765 aa21.43■■□□□ 1.02
SQSTM1-216ENST00000626660 SETD4Q9NVD3 440 aa21.43■■□□□ 1.02
SQSTM1-216ENST00000626660 RGL1Q9NZL6 768 aa21.43■■□□□ 1.02
SQSTM1-216ENST00000626660 TFIP11Q9UBB9 837 aaKnown RBP21.43■■□□□ 1.02
SQSTM1-216ENST00000626660 CFAP45Q9UL16 551 aa21.43■■□□□ 1.02
SQSTM1-216ENST00000626660 NR2E3Q9Y5X4 410 aa21.43■■□□□ 1.02
SQSTM1-216ENST00000626660 ZNF862O60290 1169 aa21.42■■□□□ 1.02
SQSTM1-216ENST00000626660 B4GALT4O60513 344 aa21.42■■□□□ 1.02
SQSTM1-216ENST00000626660 CLTBP09497 229 aa21.42■■□□□ 1.02
SQSTM1-216ENST00000626660 INSRRP14616 1297 aa21.42■■□□□ 1.02
SQSTM1-216ENST00000626660 SLC39A14Q15043 492 aa21.42■■□□□ 1.02
SQSTM1-216ENST00000626660 GRIK4Q16099 956 aa21.42■■□□□ 1.02
SQSTM1-216ENST00000626660 PTGISQ16647 500 aa21.42■■□□□ 1.02
SQSTM1-216ENST00000626660 XKR3Q5GH77 459 aa21.42■■□□□ 1.02
SQSTM1-216ENST00000626660 GDF6Q6KF10 455 aaPredicted RBP21.42■■□□□ 1.02
SQSTM1-216ENST00000626660 TRMT1LQ7Z2T5 733 aaKnown RBP21.42■■□□□ 1.02
SQSTM1-216ENST00000626660 TPH2Q8IWU9 490 aa21.42■■□□□ 1.02
SQSTM1-216ENST00000626660 ZSWIM4Q9H7M6 989 aa21.42■■□□□ 1.02
SQSTM1-216ENST00000626660 TRMT13Q9NUP7 481 aaKnown RBP21.42■■□□□ 1.02
SQSTM1-216ENST00000626660 PRKAG2Q9UGJ0 569 aa21.42■■□□□ 1.02
SQSTM1-216ENST00000626660 COL1A2P08123 1366 aa21.41■■□□□ 1.02
SQSTM1-216ENST00000626660 YEATS4O95619 227 aa21.41■■□□□ 1.02
SQSTM1-216ENST00000626660 CD4P01730 458 aa21.41■■□□□ 1.02
SQSTM1-216ENST00000626660 ATP4AP20648 1035 aa21.41■■□□□ 1.02
SQSTM1-216ENST00000626660 CTTNQ14247 550 aaKnown RBP21.41■■□□□ 1.02
SQSTM1-216ENST00000626660 IL17AQ16552 155 aa21.41■■□□□ 1.02
SQSTM1-216ENST00000626660 ZNF484Q5JVG2 852 aa21.41■■□□□ 1.02
SQSTM1-216ENST00000626660 KRT79Q5XKE5 535 aa21.41■■□□□ 1.02
SQSTM1-216ENST00000626660 LMBR1Q8WVP7 490 aa21.41■■□□□ 1.02
SQSTM1-216ENST00000626660 AK8Q96MA6 479 aa21.41■■□□□ 1.02
SQSTM1-216ENST00000626660 HSD17B14Q9BPX1 270 aa21.41■■□□□ 1.02
SQSTM1-216ENST00000626660 POLR3CQ9BUI4 534 aaPredicted RBP21.41■■□□□ 1.02
SQSTM1-216ENST00000626660 TUFT1Q9NNX1 390 aa21.41■■□□□ 1.02
SQSTM1-216ENST00000626660 PRDM5Q9NQX1 630 aaPredicted RBP21.41■■□□□ 1.02
SQSTM1-216ENST00000626660 TMEM39AQ9NV64 488 aa21.41■■□□□ 1.02
SQSTM1-216ENST00000626660 MORC2Q9Y6X9 1032 aaPredicted RBP21.41■■□□□ 1.02
SQSTM1-216ENST00000626660 DDX11L8A8MPP1 907 aa21.4■■□□□ 1.02
SQSTM1-216ENST00000626660 SLITRK3O94933 977 aa21.4■■□□□ 1.02
SQSTM1-216ENST00000626660 NCLP19338 710 aaKnown RBP21.4■■□□□ 1.02
SQSTM1-216ENST00000626660 MARCKSP29966 332 aaPredicted RBP21.4■■□□□ 1.02
SQSTM1-216ENST00000626660 HOXC8P31273 242 aa21.4■■□□□ 1.02
SQSTM1-216ENST00000626660 LONP1P36776 959 aaKnown RBP21.4■■□□□ 1.02
SQSTM1-216ENST00000626660 CCT6AP40227 531 aaKnown RBP21.4■■□□□ 1.02
SQSTM1-216ENST00000626660 IGBP1P78318 339 aa21.4■■□□□ 1.02
SQSTM1-216ENST00000626660 DNM1Q05193 864 aaKnown RBP21.4■■□□□ 1.02
SQSTM1-216ENST00000626660 FAAP100Q0VG06 881 aa21.4■■□□□ 1.02
SQSTM1-216ENST00000626660 C4orf19Q8IY42 314 aa21.4■■□□□ 1.02
SQSTM1-216ENST00000626660 LINC00301Q8NCQ3 95 aa21.4■■□□□ 1.02
SQSTM1-216ENST00000626660 SNX29Q8TEQ0 813 aa21.4■■□□□ 1.02
SQSTM1-216ENST00000626660 IPO9Q96P70 1041 aaKnown RBP21.4■■□□□ 1.02
SQSTM1-216ENST00000626660 SEPT9Q9UHD8 586 aaPredicted RBP21.4■■□□□ 1.02
SQSTM1-216ENST00000626660 CEP290O15078 2479 aa21.4■■□□□ 1.02
SQSTM1-216ENST00000626660 SPTLC2O15270 562 aa21.39■■□□□ 1.01
SQSTM1-216ENST00000626660 RPA1P27694 616 aa21.39■■□□□ 1.01
SQSTM1-216ENST00000626660 KRT85P78386 507 aa21.39■■□□□ 1.01
SQSTM1-216ENST00000626660 ZNF200P98182 395 aaPredicted RBP21.39■■□□□ 1.01
SQSTM1-216ENST00000626660 OTUD6AQ7L8S5 288 aa21.39■■□□□ 1.01
SQSTM1-216ENST00000626660 CCDC155Q8N6L0 562 aa21.39■■□□□ 1.01
SQSTM1-216ENST00000626660 CCDC43Q96MW1 224 aaKnown RBP21.39■■□□□ 1.01
SQSTM1-216ENST00000626660 PDLIM7Q9NR12 457 aa21.39■■□□□ 1.01
SQSTM1-216ENST00000626660 TUBE1Q9UJT0 475 aa21.39■■□□□ 1.01
SQSTM1-216ENST00000626660 SRPRBQ9Y5M8 271 aaKnown RBP21.39■■□□□ 1.01
SQSTM1-216ENST00000626660 TCHHQ07283 1943 aa21.38■■□□□ 1.01
SQSTM1-216ENST00000626660 LYPLA2O95372 231 aa21.38■■□□□ 1.01
SQSTM1-216ENST00000626660 MUTP22033 750 aa21.38■■□□□ 1.01
SQSTM1-216ENST00000626660 PTK7Q13308 1070 aa21.38■■□□□ 1.01
SQSTM1-216ENST00000626660 CATSPER3Q86XQ3 398 aa21.38■■□□□ 1.01
SQSTM1-216ENST00000626660 KRI1Q8N9T8 703 aaKnown RBP21.38■■□□□ 1.01
SQSTM1-216ENST00000626660 KCNG4Q8TDN1 519 aa21.38■■□□□ 1.01
SQSTM1-216ENST00000626660 CHMP5Q9NZZ3 219 aa21.38■■□□□ 1.01
SQSTM1-216ENST00000626660 FBXO2Q9UK22 296 aaPredicted RBP21.38■■□□□ 1.01
SQSTM1-216ENST00000626660 PP2D1A8MPX8 630 aa21.37■■□□□ 1.01
SQSTM1-216ENST00000626660 TREHO43280 583 aa21.37■■□□□ 1.01
SQSTM1-216ENST00000626660 MED24O75448 989 aa21.37■■□□□ 1.01
SQSTM1-216ENST00000626660 SPATA31C1P0DKV0 1188 aa21.37■■□□□ 1.01
SQSTM1-216ENST00000626660 CYP2C9P11712 490 aa21.37■■□□□ 1.01
SQSTM1-216ENST00000626660 YWHABP31946 246 aaKnown RBP21.37■■□□□ 1.01
SQSTM1-216ENST00000626660 FXR1P51114 621 aaKnown RBP eCLIP21.37■■□□□ 1.014e-6■□□□□ 9.8
SQSTM1-216ENST00000626660 ADAM17P78536 824 aa21.37■■□□□ 1.01
SQSTM1-216ENST00000626660 HIC1Q14526 733 aa21.37■■□□□ 1.01
SQSTM1-216ENST00000626660 SERINC5Q86VE9 423 aa21.37■■□□□ 1.01
SQSTM1-216ENST00000626660 TRAPPC12Q8WVT3 735 aa21.37■■□□□ 1.01
SQSTM1-216ENST00000626660 NACC1Q96RE7 527 aa21.37■■□□□ 1.01
SQSTM1-216ENST00000626660 NIFKQ9BYG3 293 aaKnown RBP21.37■■□□□ 1.01
SQSTM1-216ENST00000626660 WRAP73Q9P2S5 460 aaPredicted RBP21.37■■□□□ 1.01
SQSTM1-216ENST00000626660 TBX21Q9UL17 535 aa21.37■■□□□ 1.01
SQSTM1-216ENST00000626660 COLQQ9Y215 455 aaPredicted RBP21.37■■□□□ 1.01
SQSTM1-216ENST00000626660 EVPLQ92817 2033 aa21.37■■□□□ 1.01
SQSTM1-216ENST00000626660 MKI67P46013 3256 aaKnown RBP21.37■■□□□ 1.01
SQSTM1-216ENST00000626660 DNAH12Q6ZR08 3092 aa21.37■■□□□ 1.01
SQSTM1-216ENST00000626660 KDM3AQ9Y4C1 1321 aa21.36■■□□□ 1.01
SQSTM1-216ENST00000626660 KIAA0355O15063 1070 aa21.36■■□□□ 1.01
SQSTM1-216ENST00000626660 MAGEB2O15479 319 aa21.36■■□□□ 1.01
SQSTM1-216ENST00000626660 PPP6R2O75170 966 aa21.36■■□□□ 1.01
SQSTM1-216ENST00000626660 STBD1O95210 358 aa21.36■■□□□ 1.01
SQSTM1-216ENST00000626660 UBA7P41226 1012 aa21.36■■□□□ 1.01
SQSTM1-216ENST00000626660 BFSP2Q13515 415 aa21.36■■□□□ 1.01
SQSTM1-216ENST00000626660 MTERF2Q49AM1 385 aa21.36■■□□□ 1.01
SQSTM1-216ENST00000626660 TAF2Q6P1X5 1199 aa21.36■■□□□ 1.01
SQSTM1-216ENST00000626660 ANO5Q75V66 913 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms