RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 PBKQ96KB5 322 aa13.96□□□□□ -0.17
MSH6-215ENST00000622629 FAM20AQ96MK3 541 aa13.96□□□□□ -0.17
MSH6-215ENST00000622629 BUB1BO60566 1050 aaPredicted RBP13.96□□□□□ -0.18
MSH6-215ENST00000622629 CD19P15391 556 aa13.96□□□□□ -0.18
MSH6-215ENST00000622629 ARHGAP25P42331 645 aa13.96□□□□□ -0.18
MSH6-215ENST00000622629 IFNAR2P48551 515 aa13.96□□□□□ -0.18
MSH6-215ENST00000622629 APBA1Q02410 837 aa13.96□□□□□ -0.18
MSH6-215ENST00000622629 SP8Q8IXZ3 490 aa13.96□□□□□ -0.18
MSH6-215ENST00000622629 BANK1Q8NDB2 785 aa13.96□□□□□ -0.18
MSH6-215ENST00000622629 ZNF446Q9NWS9 450 aa13.96□□□□□ -0.18
MSH6-215ENST00000622629 GAS8O95995 478 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 NMT1P30419 496 aaKnown RBP13.95□□□□□ -0.18
MSH6-215ENST00000622629 USP11P51784 963 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 GRIK5Q16478 980 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 SLC27A3Q5K4L6 730 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 BEND6Q5SZJ8 279 aaPredicted RBP13.95□□□□□ -0.18
MSH6-215ENST00000622629 ALS2CLQ60I27 953 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 ERGIC2Q96RQ1 377 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 GOLPH3Q9H4A6 298 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 PLAGL2Q9UPG8 496 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 C21orf2O43822 256 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 PPFIA4O75335 1185 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 IFNB1P01574 187 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 NR1D1P20393 614 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 MXI1P50539 228 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 PDE6CP51160 858 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 IFT88Q13099 833 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 CCDC93Q567U6 631 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 OTUD6AQ7L8S5 288 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 ZNF653Q96CK0 615 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 RTFDC1Q9BY42 306 aaPredicted RBP13.95□□□□□ -0.18
MSH6-215ENST00000622629 SLC9A1P19634 815 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 DMP1Q13316 513 aaPredicted RBP13.95□□□□□ -0.18
MSH6-215ENST00000622629 E2F4Q16254 413 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 AOC3Q16853 763 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 PNMA8AQ86V59 439 aaPredicted RBP13.95□□□□□ -0.18
MSH6-215ENST00000622629 GLYCTKQ8IVS8 523 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 DAGLBQ8NCG7 672 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 PROCA1Q8NCQ7 364 aaPredicted RBP13.95□□□□□ -0.18
MSH6-215ENST00000622629 SEMA6BQ9H3T3 888 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 TYW1Q9NV66 732 aaKnown RBP13.95□□□□□ -0.18
MSH6-215ENST00000622629 AGTPBP1Q9UPW5 1226 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 TACC3Q9Y6A5 838 aa13.95□□□□□ -0.18
MSH6-215ENST00000622629 DKC1O60832 514 aaKnown RBP eCLIP13.94□□□□□ -0.18
MSH6-215ENST00000622629 GCLMP48507 274 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 LIG4P49917 911 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 UAP1Q16222 522 aaPredicted RBP13.94□□□□□ -0.18
MSH6-215ENST00000622629 PPP2R5EQ16537 467 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 C10orf76Q5T2E6 689 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 EIF2AK1Q9BQI3 630 aaKnown RBP13.94□□□□□ -0.18
MSH6-215ENST00000622629 C1orf112Q9NSG2 853 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 POLLQ9UGP5 575 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 CAPN6Q9Y6Q1 641 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 ECE2O60344 883 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 NDUFB10O96000 172 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 SLCO1A2P46721 670 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 NFIAQ12857 509 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 ZNF211Q13398 564 aaPredicted RBP13.94□□□□□ -0.18
MSH6-215ENST00000622629 TRPC3Q13507 836 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 CCNI2Q6ZMN8 369 aaPredicted RBP13.94□□□□□ -0.18
MSH6-215ENST00000622629 DNAJC7Q99615 494 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 NOVA2Q9UNW9 492 aaKnown RBP13.94□□□□□ -0.18
MSH6-215ENST00000622629 ZNF142P52746 1687 aaPredicted RBP13.94□□□□□ -0.18
MSH6-215ENST00000622629 PEX3P56589 373 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 SNX1Q13596 522 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 ZNF746Q6NUN9 644 aaPredicted RBP13.94□□□□□ -0.18
MSH6-215ENST00000622629 CAPN12Q6ZSI9 719 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 RSRC2Q7L4I2 434 aaKnown RBP13.94□□□□□ -0.18
MSH6-215ENST00000622629 MCF2L2Q86YR7 1114 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 WHAMMQ8TF30 809 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 NT5C1BQ96P26 610 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 SLIT3O75094 1523 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 R3HDM1Q15032 1099 aaKnown RBP13.94□□□□□ -0.18
MSH6-215ENST00000622629 CACNA2D3Q8IZS8 1091 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 ACCSQ96QU6 501 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 REEP2Q9BRK0 252 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 EDEM3Q9BZQ6 932 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 PLAAQ9Y263 795 aa13.94□□□□□ -0.18
MSH6-215ENST00000622629 LRRIQ4A6NIV6 560 aa13.93□□□□□ -0.18
MSH6-215ENST00000622629 KLRC1P26715 233 aa13.93□□□□□ -0.18
MSH6-215ENST00000622629 ADCY8P40145 1251 aa13.93□□□□□ -0.18
MSH6-215ENST00000622629 FXR2P51116 673 aaKnown RBP eCLIP13.93□□□□□ -0.184e-7■■■■■ 30.4
MSH6-215ENST00000622629 HERVK_113P62684 666 aa13.93□□□□□ -0.18
MSH6-215ENST00000622629 DRAP1Q14919 205 aaPredicted RBP13.93□□□□□ -0.18
MSH6-215ENST00000622629 SLC18A3Q16572 532 aa13.93□□□□□ -0.18
MSH6-215ENST00000622629 DEPTORQ8TB45 409 aa13.93□□□□□ -0.18
MSH6-215ENST00000622629 IQCGQ9H095 443 aaKnown RBP13.93□□□□□ -0.18
MSH6-215ENST00000622629 RBM12Q9NTZ6 932 aaKnown RBP13.93□□□□□ -0.18
MSH6-215ENST00000622629 TMOD4Q9NZQ9 345 aa13.93□□□□□ -0.18
MSH6-215ENST00000622629 L1RE1Q9UN81 338 aa13.93□□□□□ -0.18
MSH6-215ENST00000622629 ESYT2A0FGR8 921 aa13.93□□□□□ -0.18
MSH6-215ENST00000622629 SASH3O75995 380 aa13.93□□□□□ -0.18
MSH6-215ENST00000622629 HOXA7P31268 230 aaPredicted RBP13.93□□□□□ -0.18
MSH6-215ENST00000622629 CEP170P1Q96L14 293 aa13.93□□□□□ -0.18
MSH6-215ENST00000622629 GINS2Q9Y248 185 aa13.93□□□□□ -0.18
MSH6-215ENST00000622629 SSU72P8A0A1W2PR75 194 aa13.93□□□□□ -0.18
MSH6-215ENST00000622629 TAOK1Q7L7X3 1001 aa13.93□□□□□ -0.18
MSH6-215ENST00000622629 SH2D3CQ8N5H7 860 aa13.93□□□□□ -0.18
MSH6-215ENST00000622629 FMO2Q99518 471 aa13.93□□□□□ -0.18
MSH6-215ENST00000622629 FAM114A2Q9NRY5 505 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms