RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 CDY2AQ9Y6F7 541 aa21.65■■□□□ 1.06
CCDC28A-203ENST00000617445 SIP14410 1827 aa21.64■■□□□ 1.06
CCDC28A-203ENST00000617445 COL1A2P08123 1366 aa21.64■■□□□ 1.06
CCDC28A-203ENST00000617445 SMIM35A0A1B0GVV1 85 aa21.64■■□□□ 1.05
CCDC28A-203ENST00000617445 EIF5BO60841 1220 aaKnown RBP21.64■■□□□ 1.05
CCDC28A-203ENST00000617445 DEXIO95424 95 aa21.64■■□□□ 1.05
CCDC28A-203ENST00000617445 GHRP10912 638 aa21.64■■□□□ 1.05
CCDC28A-203ENST00000617445 NLRP5P59047 1200 aa21.64■■□□□ 1.05
CCDC28A-203ENST00000617445 KRT76Q01546 638 aa21.64■■□□□ 1.05
CCDC28A-203ENST00000617445 LPIN1Q14693 890 aa21.64■■□□□ 1.05
CCDC28A-203ENST00000617445 AAK1Q2M2I8 961 aa21.64■■□□□ 1.05
CCDC28A-203ENST00000617445 FBXO47Q5MNV8 452 aa21.64■■□□□ 1.05
CCDC28A-203ENST00000617445 TSHZ1Q6ZSZ6 1077 aa21.64■■□□□ 1.05
CCDC28A-203ENST00000617445 ATP8B4Q8TF62 1192 aa21.64■■□□□ 1.05
CCDC28A-203ENST00000617445 YME1L1Q96TA2 773 aa21.64■■□□□ 1.05
CCDC28A-203ENST00000617445 OSBPL7Q9BZF2 842 aa21.64■■□□□ 1.05
CCDC28A-203ENST00000617445 SUGCTQ9HAC7 445 aa21.64■■□□□ 1.05
CCDC28A-203ENST00000617445 ZNF302Q9NR11 478 aa21.64■■□□□ 1.05
CCDC28A-203ENST00000617445 PDRG1Q9NUG6 133 aa21.64■■□□□ 1.05
CCDC28A-203ENST00000617445 VPS54Q9P1Q0 977 aa21.64■■□□□ 1.05
CCDC28A-203ENST00000617445 DDX39AO00148 427 aaKnown RBP21.63■■□□□ 1.05
CCDC28A-203ENST00000617445 LPXNO60711 386 aa21.63■■□□□ 1.05
CCDC28A-203ENST00000617445 PRR16Q569H4 304 aa21.63■■□□□ 1.05
CCDC28A-203ENST00000617445 ZNF484Q5JVG2 852 aa21.63■■□□□ 1.05
CCDC28A-203ENST00000617445 GALNT17Q6IS24 598 aa21.63■■□□□ 1.05
CCDC28A-203ENST00000617445 PDXDC2PQ6P474 469 aa21.63■■□□□ 1.05
CCDC28A-203ENST00000617445 UPF3BQ9BZI7 483 aaKnown RBP21.63■■□□□ 1.05
CCDC28A-203ENST00000617445 COG5Q9UP83 839 aa21.63■■□□□ 1.05
CCDC28A-203ENST00000617445 TTC3P53804 2025 aa21.63■■□□□ 1.05
CCDC28A-203ENST00000617445 KDM3AQ9Y4C1 1321 aa21.62■■□□□ 1.05
CCDC28A-203ENST00000617445 ADAMTS3O15072 1205 aa21.62■■□□□ 1.05
CCDC28A-203ENST00000617445 ANAPC15P60006 121 aa21.62■■□□□ 1.05
CCDC28A-203ENST00000617445 SKIV2LQ15477 1246 aaKnown RBP21.62■■□□□ 1.05
CCDC28A-203ENST00000617445 SWSAP1Q6NVH7 229 aa21.62■■□□□ 1.05
CCDC28A-203ENST00000617445 MTHFD1LQ6UB35 978 aa21.62■■□□□ 1.05
CCDC28A-203ENST00000617445 CCDC60Q8IWA6 550 aaPredicted RBP21.62■■□□□ 1.05
CCDC28A-203ENST00000617445 IL27Q8NEV9 243 aa21.62■■□□□ 1.05
CCDC28A-203ENST00000617445 FTHL17Q9BXU8 183 aa21.62■■□□□ 1.05
CCDC28A-203ENST00000617445 FAM49AQ9H0Q0 323 aaPredicted RBP21.62■■□□□ 1.05
CCDC28A-203ENST00000617445 PCDHA10Q9Y5I2 948 aa21.62■■□□□ 1.05
CCDC28A-203ENST00000617445 MAFBQ9Y5Q3 323 aaPredicted RBP21.62■■□□□ 1.05
CCDC28A-203ENST00000617445 TRPV2Q9Y5S1 764 aa21.62■■□□□ 1.05
CCDC28A-203ENST00000617445 COL4A6Q14031 1691 aa21.62■■□□□ 1.05
CCDC28A-203ENST00000617445 CDKL5O76039 1030 aa21.61■■□□□ 1.05
CCDC28A-203ENST00000617445 UPP2O95045 317 aa21.61■■□□□ 1.05
CCDC28A-203ENST00000617445 PSAPP07602 524 aa21.61■■□□□ 1.05
CCDC28A-203ENST00000617445 SPRED2Q7Z698 418 aa21.61■■□□□ 1.05
CCDC28A-203ENST00000617445 FBXO22Q8NEZ5 403 aa21.61■■□□□ 1.05
CCDC28A-203ENST00000617445 RASGRP4Q8TDF6 673 aa21.61■■□□□ 1.05
CCDC28A-203ENST00000617445 BBXQ8WY36 941 aaPredicted RBP21.61■■□□□ 1.05
CCDC28A-203ENST00000617445 CELF4Q9BZC1 486 aaKnown RBP21.61■■□□□ 1.05
CCDC28A-203ENST00000617445 PCDHA4Q9UN74 947 aa21.61■■□□□ 1.05
CCDC28A-203ENST00000617445 EVPLQ92817 2033 aa21.61■■□□□ 1.05
CCDC28A-203ENST00000617445 BRWD1Q9NSI6 2320 aa21.6■■□□□ 1.05
CCDC28A-203ENST00000617445 ENPP3O14638 875 aa21.6■■□□□ 1.05
CCDC28A-203ENST00000617445 PPFIA3O75145 1194 aa21.6■■□□□ 1.05
CCDC28A-203ENST00000617445 KLRC1P26715 233 aa21.6■■□□□ 1.05
CCDC28A-203ENST00000617445 GDPD5Q8WTR4 605 aa21.6■■□□□ 1.05
CCDC28A-203ENST00000617445 TRAPPC12Q8WVT3 735 aa21.6■■□□□ 1.05
CCDC28A-203ENST00000617445 IL17RAQ96F46 866 aa21.6■■□□□ 1.05
CCDC28A-203ENST00000617445 RIT2Q99578 217 aa21.6■■□□□ 1.05
CCDC28A-203ENST00000617445 MTUS1Q9ULD2 1270 aa21.6■■□□□ 1.05
CCDC28A-203ENST00000617445 IGSF9BQ9UPX0 1349 aa21.59■■□□□ 1.05
CCDC28A-203ENST00000617445 LOXHD1Q8IVV2 1947 aa21.59■■□□□ 1.05
CCDC28A-203ENST00000617445 WDR64B1ANS9 1081 aa21.59■■□□□ 1.05
CCDC28A-203ENST00000617445 CENPBP07199 599 aaPredicted RBP21.59■■□□□ 1.05
CCDC28A-203ENST00000617445 ODR4Q5SWX8 454 aa21.59■■□□□ 1.05
CCDC28A-203ENST00000617445 CKAP2LQ8IYA6 745 aa21.59■■□□□ 1.05
CCDC28A-203ENST00000617445 DAGLBQ8NCG7 672 aa21.59■■□□□ 1.05
CCDC28A-203ENST00000617445 LENG9Q96B70 501 aa21.59■■□□□ 1.05
CCDC28A-203ENST00000617445 FAM167AQ96KS9 214 aa21.59■■□□□ 1.05
CCDC28A-203ENST00000617445 CEP131Q9UPN4 1083 aa21.59■■□□□ 1.05
CCDC28A-203ENST00000617445 COL4A4P53420 1690 aaPredicted RBP21.59■■□□□ 1.05
CCDC28A-203ENST00000617445 WDR81Q562E7 1941 aa21.59■■□□□ 1.05
CCDC28A-203ENST00000617445 ANKRD1Q15327 319 aa21.58■■□□□ 1.05
CCDC28A-203ENST00000617445 PTPROQ16827 1216 aa21.58■■□□□ 1.05
CCDC28A-203ENST00000617445 EPC2Q52LR7 807 aa21.58■■□□□ 1.05
CCDC28A-203ENST00000617445 KRT40Q6A162 431 aa21.58■■□□□ 1.05
CCDC28A-203ENST00000617445 BLIDQ8IZY5 108 aa21.58■■□□□ 1.05
CCDC28A-203ENST00000617445 ZNF710Q8N1W2 664 aa21.58■■□□□ 1.05
CCDC28A-203ENST00000617445 ZBTB10Q96DT7 871 aa21.58■■□□□ 1.05
CCDC28A-203ENST00000617445 C17orf80Q9BSJ5 609 aa21.58■■□□□ 1.05
CCDC28A-203ENST00000617445 AGO3Q9H9G7 860 aaKnown RBP21.58■■□□□ 1.05
CCDC28A-203ENST00000617445 RWDD3Q9Y3V2 267 aa21.58■■□□□ 1.05
CCDC28A-203ENST00000617445 CYP3A7-CYP3A51PA0A087WV96 503 aa21.57■■□□□ 1.04
CCDC28A-203ENST00000617445 XBP1P17861 261 aa21.57■■□□□ 1.04
CCDC28A-203ENST00000617445 ATP4AP20648 1035 aa21.57■■□□□ 1.04
CCDC28A-203ENST00000617445 CYP3A7P24462 503 aa21.57■■□□□ 1.04
CCDC28A-203ENST00000617445 CD52P31358 61 aa21.57■■□□□ 1.04
CCDC28A-203ENST00000617445 SFNP31947 248 aa21.57■■□□□ 1.04
CCDC28A-203ENST00000617445 PAK2Q13177 524 aa21.57■■□□□ 1.04
CCDC28A-203ENST00000617445 STK3Q13188 491 aa21.57■■□□□ 1.04
CCDC28A-203ENST00000617445 Q4G0T1 1027 aa21.57■■□□□ 1.04
CCDC28A-203ENST00000617445 MOXD1Q6UVY6 613 aa21.57■■□□□ 1.04
CCDC28A-203ENST00000617445 TMEM192Q8IY95 271 aa21.57■■□□□ 1.04
CCDC28A-203ENST00000617445 KIAA0319LQ8IZA0 1049 aa21.57■■□□□ 1.04
CCDC28A-203ENST00000617445 FIBCD1Q8N539 461 aa21.57■■□□□ 1.04
CCDC28A-203ENST00000617445 TBCKQ8TEA7 893 aa21.57■■□□□ 1.04
CCDC28A-203ENST00000617445 HLA-CQ95604 372 aa21.57■■□□□ 1.04
CCDC28A-203ENST00000617445 SLKQ9H2G2 1235 aaPredicted RBP21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms