RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 NMT2O60551 498 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 GYPCP04921 128 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 RAD23BP54727 409 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 VPS72Q15906 364 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 ODF2Q5BJF6 829 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 CCDC122Q5T0U0 273 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 HAUS3Q68CZ6 603 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 CLEC4GQ6UXB4 293 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 LRIG3Q6UXM1 1119 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 SPATA4Q8NEY3 305 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 FAM136AQ96C01 138 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 ABHD8Q96I13 439 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 IFT74Q96LB3 600 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 TCHPQ9BT92 498 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 SAMSN1Q9NSI8 373 aaKnown RBP11.1□□□□□ -0.63
VPS39-214ENST00000614932 ABHD10Q9NUJ1 306 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 REXO2Q9Y3B8 237 aaKnown RBP11.1□□□□□ -0.63
VPS39-214ENST00000614932 COMMD3-BMI1R4GMX3 469 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 NDUFA10O95299 355 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 GNA14O95837 355 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 FAM153BP0C7A2 387 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 CYP2D6P10635 497 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 BMP6P22004 513 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 CALB2P22676 271 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 SMARCA1P28370 1054 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 RFC4P35249 363 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 CD97P48960 835 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 RHBDL3P58872 404 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 MRPS25P82663 173 aaKnown RBP11.1□□□□□ -0.63
VPS39-214ENST00000614932 GUCY2DQ02846 1103 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 FMR1Q06787 632 aaKnown RBP eCLIP11.1□□□□□ -0.63
VPS39-214ENST00000614932 FAM153CQ494X1 144 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 FAM47AQ5JRC9 791 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 FAM196AQ6ZSG2 479 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 DNAJC9Q8WXX5 260 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 HAPLN3Q96S86 360 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 RAB17Q9H0T7 212 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 ARHGEF3Q9NR81 526 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 INIPQ9NRY2 104 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 FAM153AQ9UHL3 310 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 ZMYND8Q9ULU4 1186 aaPredicted RBP11.1□□□□□ -0.63
VPS39-214ENST00000614932 EFR3BQ9Y2G0 817 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 PCDHA5Q9Y5H7 936 aa11.1□□□□□ -0.63
VPS39-214ENST00000614932 DDX60Q8IY21 1712 aaKnown RBP11.1□□□□□ -0.63
VPS39-214ENST00000614932 BTBD18B2RXH4 712 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 IDEP14735 1019 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 TRIM21P19474 475 aaKnown RBP11.09□□□□□ -0.63
VPS39-214ENST00000614932 GSTM4Q03013 218 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 PPARDQ03181 441 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 NTRK3Q16288 839 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 SMUG1Q53HV7 270 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 TMEM53Q6P2H8 277 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 PIGWQ7Z7B1 504 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 CREG2Q8IUH2 290 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 RNF10Q8N5U6 811 aaKnown RBP11.09□□□□□ -0.63
VPS39-214ENST00000614932 CXorf38Q8TB03 319 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 UBAC1Q9BSL1 405 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 PDP2Q9P2J9 529 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 NARFQ9UHQ1 456 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 NFU1Q9UMS0 254 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 RABL2BQ9UNT1 228 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 WNK3Q9BYP7 1800 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 USP17L12C9JPN9 530 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 USP17L21D6R901 530 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 UBOX5O94941 541 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 CACNA2D1P54289 1103 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 SSRP1Q08945 709 aaKnown RBP11.09□□□□□ -0.63
VPS39-214ENST00000614932 NR5A1Q13285 461 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 SF3B3Q15393 1217 aaKnown RBP11.09□□□□□ -0.63
VPS39-214ENST00000614932 ANO1Q5XXA6 986 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 C8orf74Q6P047 294 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 STKLD1Q8NE28 680 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 ATP8B4Q8TF62 1192 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 UCMAQ8WVF2 138 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 TMEM87BQ96K49 555 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 PPP1R12CQ9BZL4 782 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 MIS12Q9H081 205 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 RNPEPL1Q9HAU8 725 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 NKX1-2Q9UD57 310 aaPredicted RBP11.09□□□□□ -0.63
VPS39-214ENST00000614932 ITM2BQ9Y287 266 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 ATRNO75882 1429 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 MROH7-TTC4A0A0A0MT08 1334 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 ITIH6Q6UXX5 1313 aa11.09□□□□□ -0.63
VPS39-214ENST00000614932 HTR3EA5X5Y0 456 aa11.08□□□□□ -0.63
VPS39-214ENST00000614932 RPS6KA4O75676 772 aa11.08□□□□□ -0.63
VPS39-214ENST00000614932 VARSP26640 1264 aaKnown RBP11.08□□□□□ -0.63
VPS39-214ENST00000614932 MATR3P43243 847 aaKnown RBP eCLIP11.08□□□□□ -0.63
VPS39-214ENST00000614932 CLCN2P51788 898 aa11.08□□□□□ -0.63
VPS39-214ENST00000614932 MECOMQ03112 1051 aa11.08□□□□□ -0.63
VPS39-214ENST00000614932 TRIM29Q14134 588 aa11.08□□□□□ -0.63
VPS39-214ENST00000614932 NFIXQ14938 502 aa11.08□□□□□ -0.63
VPS39-214ENST00000614932 APTXQ7Z2E3 356 aaKnown RBP11.08□□□□□ -0.63
VPS39-214ENST00000614932 DZIP1Q86YF9 867 aaKnown RBP11.08□□□□□ -0.63
VPS39-214ENST00000614932 TRMT44Q8IYL2 757 aaKnown RBP11.08□□□□□ -0.63
VPS39-214ENST00000614932 FBXL16Q8N461 479 aa11.08□□□□□ -0.63
VPS39-214ENST00000614932 BHMTQ93088 406 aa11.08□□□□□ -0.63
VPS39-214ENST00000614932 SPATA16Q9BXB7 569 aa11.08□□□□□ -0.63
VPS39-214ENST00000614932 PLCB1Q9NQ66 1216 aa11.08□□□□□ -0.63
VPS39-214ENST00000614932 SUCLA2Q9P2R7 463 aaPredicted RBP11.08□□□□□ -0.63
VPS39-214ENST00000614932 CNOT8Q9UFF9 292 aaKnown RBP11.08□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms