RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 GSTA5Q7RTV2 222 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 CCDC13Q8IYE1 715 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 CEP63Q96MT8 703 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 EDEM3Q9BZQ6 932 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 ACTR5Q9H9F9 607 aaPredicted RBP13.7□□□□□ -0.22
LIG1-221ENST00000613670 METTL14Q9HCE5 456 aaKnown RBP13.7□□□□□ -0.22
LIG1-221ENST00000613670 PLCB1Q9NQ66 1216 aa13.7□□□□□ -0.22
LIG1-221ENST00000613670 PALM3A6NDB9 673 aaPredicted RBP13.69□□□□□ -0.22
LIG1-221ENST00000613670 CCDC188H7C350 402 aa13.69□□□□□ -0.22
LIG1-221ENST00000613670 ITGA4P13612 1032 aa13.69□□□□□ -0.22
LIG1-221ENST00000613670 UCHL3P15374 230 aa13.69□□□□□ -0.22
LIG1-221ENST00000613670 BIRC3Q13489 604 aa13.69□□□□□ -0.22
LIG1-221ENST00000613670 SNX1Q13596 522 aa13.69□□□□□ -0.22
LIG1-221ENST00000613670 LRRC14Q15048 493 aa13.69□□□□□ -0.22
LIG1-221ENST00000613670 METTL13Q8N6R0 699 aa13.69□□□□□ -0.22
LIG1-221ENST00000613670 FERP16591 822 aa13.69□□□□□ -0.22
LIG1-221ENST00000613670 NEDD1Q8NHV4 660 aa13.69□□□□□ -0.22
LIG1-221ENST00000613670 MICAL1Q8TDZ2 1067 aa13.69□□□□□ -0.22
LIG1-221ENST00000613670 CAVIN3Q969G5 261 aa13.69□□□□□ -0.22
LIG1-221ENST00000613670 BLOC1S4Q9NUP1 217 aa13.69□□□□□ -0.22
LIG1-221ENST00000613670 ERVK-9P63128 1117 aa13.69□□□□□ -0.22
LIG1-221ENST00000613670 FAM178BQ8IXR5 827 aa13.69□□□□□ -0.22
LIG1-221ENST00000613670 KAT2BQ92831 832 aa13.69□□□□□ -0.22
LIG1-221ENST00000613670 SLC40A1Q9NP59 571 aa13.69□□□□□ -0.22
LIG1-221ENST00000613670 CHORDC1Q9UHD1 332 aaPredicted RBP13.69□□□□□ -0.22
LIG1-221ENST00000613670 HOXA13P31271 388 aaPredicted RBP13.68□□□□□ -0.22
LIG1-221ENST00000613670 ZYXQ15942 572 aaKnown RBP13.68□□□□□ -0.22
LIG1-221ENST00000613670 ZNF746Q6NUN9 644 aaPredicted RBP13.68□□□□□ -0.22
LIG1-221ENST00000613670 CAPN12Q6ZSI9 719 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 TAOK1Q7L7X3 1001 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 THOC1Q96FV9 657 aaKnown RBP13.68□□□□□ -0.22
LIG1-221ENST00000613670 SEC16BQ96JE7 1060 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 PNMA5Q96PV4 448 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 NAP1L4Q99733 375 aaKnown RBP13.68□□□□□ -0.22
LIG1-221ENST00000613670 PLVAPQ9BX97 442 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 AZI2Q9H6S1 392 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 NKIRAS1Q9NYS0 192 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 TBK1Q9UHD2 729 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 RABGAP1Q9Y3P9 1069 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 CRYBG1Q9Y4K1 1723 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 PNMA6FA0A0J9YX94 578 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 ACSL3O95573 720 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 TTLL1O95922 423 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 AKR1B1P15121 316 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 SEMA3FQ13275 785 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 TRIP13Q15645 432 aaPredicted RBP13.68□□□□□ -0.22
LIG1-221ENST00000613670 PARP9Q8IXQ6 854 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 PCIF1Q9H4Z3 704 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 NR3C1P04150 777 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 LACTBP83111 547 aaPredicted RBP13.68□□□□□ -0.22
LIG1-221ENST00000613670 SF3B3Q15393 1217 aaKnown RBP13.68□□□□□ -0.22
LIG1-221ENST00000613670 PHLDB2Q86SQ0 1253 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 VSIG1Q86XK7 387 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 ADGRF4Q8IZF3 695 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 SPICE1Q8N0Z3 855 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 BANK1Q8NDB2 785 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 GLG1Q92896 1179 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 ISCUQ9H1K1 167 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 DNAJC12Q9UKB3 198 aa13.68□□□□□ -0.22
LIG1-221ENST00000613670 EIF4E1BA6NMX2 242 aaKnown RBP13.67□□□□□ -0.22
LIG1-221ENST00000613670 TRIM49P0CI25 452 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 TRIM49CP0CI26 452 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 KRT5P13647 590 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 PEX19P40855 299 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 GALCP54803 685 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 CTTNQ14247 550 aaKnown RBP13.67□□□□□ -0.22
LIG1-221ENST00000613670 TRAPPC3LQ5T215 181 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 GDAP1Q8TB36 358 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 RUBCNQ92622 972 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 TTYH3Q9C0H2 523 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 SERPINB13Q9UIV8 391 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 SLIT3O75094 1523 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 MYH8P13535 1937 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 ARHGEF35A5YM69 484 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 STX2P32856 288 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 PLCB3Q01970 1234 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 DOK7Q18PE1 504 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 ODR4Q5SWX8 454 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 CCDC174Q6PII3 467 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 CLEC4GQ6UXB4 293 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 PPM1KQ8N3J5 372 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 ANO3Q9BYT9 981 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 HOMER3Q9NSC5 361 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 LMNB1P20700 586 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 USP11P51784 963 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 NFIXQ14938 502 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 KNOP1Q1ED39 458 aaKnown RBP13.67□□□□□ -0.22
LIG1-221ENST00000613670 C10orf76Q5T2E6 689 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 SLFN13Q68D06 897 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 INTS8Q75QN2 995 aaKnown RBP13.67□□□□□ -0.22
LIG1-221ENST00000613670 KIRREL3Q8IZU9 778 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 BAP1Q92560 729 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 ZNF622Q969S3 477 aaKnown RBP eCLIP13.67□□□□□ -0.227e-7■■□□□ 12.1
LIG1-221ENST00000613670 CCDC127Q96BQ5 260 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 FAM212AQ96EL1 285 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 CHMP6Q96FZ7 201 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 CCDC77Q9BR77 488 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 NAGPAQ9UK23 515 aa13.67□□□□□ -0.22
LIG1-221ENST00000613670 ZNF335Q9H4Z2 1342 aaPredicted RBP13.66□□□□□ -0.22
LIG1-221ENST00000613670 SLC8A1P32418 973 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms