RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 PRKCEQ02156 737 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 PKP1Q13835 747 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 WNT8BQ93098 351 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 RGL1Q9NZL6 768 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 TUBE1Q9UJT0 475 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 UMODL1Q5DID0 1318 aa18.58■□□□□ 0.57
CCDC28A-202ENST00000611852 ZBTB42B2RXF5 422 aa18.58■□□□□ 0.56
CCDC28A-202ENST00000611852 STBD1O95210 358 aa18.58■□□□□ 0.56
CCDC28A-202ENST00000611852 ZSCAN22P10073 491 aaPredicted RBP18.58■□□□□ 0.56
CCDC28A-202ENST00000611852 CYP2C18P33260 490 aa18.58■□□□□ 0.56
CCDC28A-202ENST00000611852 MAGEA10P43363 369 aaPredicted RBP18.58■□□□□ 0.56
CCDC28A-202ENST00000611852 FXR2P51116 673 aaKnown RBP eCLIP18.58■□□□□ 0.56
CCDC28A-202ENST00000611852 MDM2Q00987 491 aaPredicted RBP18.58■□□□□ 0.56
CCDC28A-202ENST00000611852 PRPF38BQ5VTL8 546 aaKnown RBP18.58■□□□□ 0.56
CCDC28A-202ENST00000611852 TRAPPC12Q8WVT3 735 aa18.58■□□□□ 0.56
CCDC28A-202ENST00000611852 BADQ92934 168 aa18.58■□□□□ 0.56
CCDC28A-202ENST00000611852 HSD17B14Q9BPX1 270 aa18.58■□□□□ 0.56
CCDC28A-202ENST00000611852 EIF2AK1Q9BQI3 630 aaKnown RBP18.58■□□□□ 0.56
CCDC28A-202ENST00000611852 LXNQ9BS40 222 aa18.58■□□□□ 0.56
CCDC28A-202ENST00000611852 WRAP73Q9P2S5 460 aaPredicted RBP18.58■□□□□ 0.56
CCDC28A-202ENST00000611852 COL1A2P08123 1366 aa18.58■□□□□ 0.56
CCDC28A-202ENST00000611852 PITPNM1O00562 1244 aa18.57■□□□□ 0.56
CCDC28A-202ENST00000611852 SLITRK3O94933 977 aa18.57■□□□□ 0.56
CCDC28A-202ENST00000611852 CYP4A11Q02928 519 aa18.57■□□□□ 0.56
CCDC28A-202ENST00000611852 RBL2Q08999 1139 aa18.57■□□□□ 0.56
CCDC28A-202ENST00000611852 BFSP2Q13515 415 aa18.57■□□□□ 0.56
CCDC28A-202ENST00000611852 IL17AQ16552 155 aa18.57■□□□□ 0.56
CCDC28A-202ENST00000611852 TMEM266Q2M3C6 531 aa18.57■□□□□ 0.56
CCDC28A-202ENST00000611852 TRIM71Q2Q1W2 868 aaKnown RBP18.57■□□□□ 0.56
CCDC28A-202ENST00000611852 ZNF484Q5JVG2 852 aa18.57■□□□□ 0.56
CCDC28A-202ENST00000611852 MFSD5Q6N075 450 aa18.57■□□□□ 0.56
CCDC28A-202ENST00000611852 CAGE1Q8TC20 777 aa18.57■□□□□ 0.56
CCDC28A-202ENST00000611852 DYDC2Q96IM9 177 aa18.57■□□□□ 0.56
CCDC28A-202ENST00000611852 LBHD1Q9BQE6 289 aaPredicted RBP18.57■□□□□ 0.56
CCDC28A-202ENST00000611852 WNT8AQ9H1J5 351 aa18.57■□□□□ 0.56
CCDC28A-202ENST00000611852 NRBP2Q9NSY0 501 aa18.57■□□□□ 0.56
CCDC28A-202ENST00000611852 CTTNQ14247 550 aaKnown RBP18.56■□□□□ 0.56
CCDC28A-202ENST00000611852 PDIA5Q14554 519 aa18.56■□□□□ 0.56
CCDC28A-202ENST00000611852 SF3A1Q15459 793 aaKnown RBP18.56■□□□□ 0.56
CCDC28A-202ENST00000611852 XKR3Q5GH77 459 aa18.56■□□□□ 0.56
CCDC28A-202ENST00000611852 FOXD4L5Q5VV16 416 aaPredicted RBP18.56■□□□□ 0.56
CCDC28A-202ENST00000611852 CCDC155Q8N6L0 562 aa18.56■□□□□ 0.56
CCDC28A-202ENST00000611852 IGSF22Q8N9C0 903 aa18.56■□□□□ 0.56
CCDC28A-202ENST00000611852 NEK9Q8TD19 979 aa18.56■□□□□ 0.56
CCDC28A-202ENST00000611852 FOXD4L4Q8WXT5 416 aaPredicted RBP18.56■□□□□ 0.56
CCDC28A-202ENST00000611852 ZBTB10Q96DT7 871 aa18.56■□□□□ 0.56
CCDC28A-202ENST00000611852 GDF15Q99988 308 aa18.56■□□□□ 0.56
CCDC28A-202ENST00000611852 FTOQ9C0B1 505 aaKnown RBP eCLIP18.56■□□□□ 0.56
CCDC28A-202ENST00000611852 DKC1O60832 514 aaKnown RBP eCLIP18.55■□□□□ 0.56
CCDC28A-202ENST00000611852 BMP15O95972 392 aa18.55■□□□□ 0.56
CCDC28A-202ENST00000611852 F13A1P00488 732 aa18.55■□□□□ 0.56
CCDC28A-202ENST00000611852 CKBP12277 381 aa18.55■□□□□ 0.56
CCDC28A-202ENST00000611852 CCL23P55773 120 aa18.55■□□□□ 0.56
CCDC28A-202ENST00000611852 ARL6IP4Q66PJ3 421 aaKnown RBP18.55■□□□□ 0.56
CCDC28A-202ENST00000611852 TAF2Q6P1X5 1199 aa18.55■□□□□ 0.56
CCDC28A-202ENST00000611852 MTHFD1LQ6UB35 978 aa18.55■□□□□ 0.56
CCDC28A-202ENST00000611852 DTHD1Q6ZMT9 781 aa18.55■□□□□ 0.56
CCDC28A-202ENST00000611852 RUFY4Q6ZNE9 571 aa18.55■□□□□ 0.56
CCDC28A-202ENST00000611852 TPH2Q8IWU9 490 aa18.55■□□□□ 0.56
CCDC28A-202ENST00000611852 C4orf19Q8IY42 314 aa18.55■□□□□ 0.56
CCDC28A-202ENST00000611852 NIFKQ9BYG3 293 aaKnown RBP18.55■□□□□ 0.56
CCDC28A-202ENST00000611852 ZSWIM4Q9H7M6 989 aa18.55■□□□□ 0.56
CCDC28A-202ENST00000611852 CEP131Q9UPN4 1083 aa18.55■□□□□ 0.56
CCDC28A-202ENST00000611852 CLIC4Q9Y696 253 aa18.55■□□□□ 0.56
CCDC28A-202ENST00000611852 TMEM150BA6NC51 233 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 KLRC1P26715 233 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 ANO5Q75V66 913 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 TMEM199Q8N511 208 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 RETREG2Q8NC44 543 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 RAB34Q9BZG1 259 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 LRWD1Q9UFC0 647 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 SEPT9Q9UHD8 586 aaPredicted RBP18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 DDX11L8A8MPP1 907 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 C22orf31O95567 290 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 IQCF3P0C7M6 154 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 SPATA31C1P0DKV0 1188 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 CSF2RAP15509 400 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 THPOP40225 353 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 FPGSQ05932 587 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 PTPAQ15257 358 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 TARBP2Q15633 366 aaKnown RBP18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 RPAINQ86UA6 219 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 CATSPER3Q86XQ3 398 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 ERMNQ8TAM6 284 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 SCLYQ96I15 445 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 USP28Q96RU2 1077 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 PCDHA2Q9Y5H9 948 aa18.54■□□□□ 0.56
CCDC28A-202ENST00000611852 MYH15Q9Y2K3 1946 aa18.53■□□□□ 0.56
CCDC28A-202ENST00000611852 VWA3AA6NCI4 1184 aa18.53■□□□□ 0.56
CCDC28A-202ENST00000611852 MED24O75448 989 aa18.53■□□□□ 0.56
CCDC28A-202ENST00000611852 LYPLA2O95372 231 aa18.53■□□□□ 0.56
CCDC28A-202ENST00000611852 BRD1O95696 1058 aa18.53■□□□□ 0.56
CCDC28A-202ENST00000611852 SELPP16109 830 aa18.53■□□□□ 0.56
CCDC28A-202ENST00000611852 YWHABP31946 246 aaKnown RBP18.53■□□□□ 0.56
CCDC28A-202ENST00000611852 ANP32AP39687 249 aaKnown RBP18.53■□□□□ 0.56
CCDC28A-202ENST00000611852 ZNF618Q5T7W0 954 aa18.53■□□□□ 0.56
CCDC28A-202ENST00000611852 TRAF7Q6Q0C0 670 aa18.53■□□□□ 0.56
CCDC28A-202ENST00000611852 LRRC8DQ7L1W4 858 aa18.53■□□□□ 0.56
CCDC28A-202ENST00000611852 DNAJB3Q8WWF6 145 aa18.53■□□□□ 0.56
CCDC28A-202ENST00000611852 CEP89Q96ST8 783 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms