RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 MTRQ99707 1265 aa17.22■□□□□ 0.35
UPF1-206ENST00000598471 GTPBP4Q9BZE4 634 aaKnown RBP17.22■□□□□ 0.35
UPF1-206ENST00000598471 TRIM9Q9C026 710 aa17.22■□□□□ 0.35
UPF1-206ENST00000598471 BLZF1Q9H2G9 400 aa17.22■□□□□ 0.35
UPF1-206ENST00000598471 ANKEF1Q9NU02 776 aa17.22■□□□□ 0.35
UPF1-206ENST00000598471 DBR1Q9UK59 544 aaKnown RBP17.22■□□□□ 0.35
UPF1-206ENST00000598471 TRIM17Q9Y577 477 aa17.22■□□□□ 0.35
UPF1-206ENST00000598471 IGKV6D-21A0A0A0MT36 114 aa17.21■□□□□ 0.35
UPF1-206ENST00000598471 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.21■□□□□ 0.35
UPF1-206ENST00000598471 RPN1P04843 607 aaKnown RBP17.21■□□□□ 0.35
UPF1-206ENST00000598471 AKR1A1P14550 325 aa17.21■□□□□ 0.35
UPF1-206ENST00000598471 SMPD1P17405 629 aa17.21■□□□□ 0.35
UPF1-206ENST00000598471 YWHABP31946 246 aaKnown RBP17.21■□□□□ 0.35
UPF1-206ENST00000598471 PSMC6P62333 389 aa17.21■□□□□ 0.35
UPF1-206ENST00000598471 PRKCEQ02156 737 aa17.21■□□□□ 0.35
UPF1-206ENST00000598471 UGCGQ16739 394 aa17.21■□□□□ 0.35
UPF1-206ENST00000598471 XKR3Q5GH77 459 aa17.21■□□□□ 0.35
UPF1-206ENST00000598471 PRAMEF19Q5SWL8 479 aa17.21■□□□□ 0.35
UPF1-206ENST00000598471 CTU1Q7Z7A3 348 aaKnown RBP17.21■□□□□ 0.35
UPF1-206ENST00000598471 PPTC7Q8NI37 304 aa17.21■□□□□ 0.35
UPF1-206ENST00000598471 SPATA20Q8TB22 786 aa17.21■□□□□ 0.35
UPF1-206ENST00000598471 AFAP1L1Q8TED9 768 aa17.21■□□□□ 0.35
UPF1-206ENST00000598471 PIGOQ8TEQ8 1089 aa17.21■□□□□ 0.35
UPF1-206ENST00000598471 FAM167AQ96KS9 214 aa17.21■□□□□ 0.35
UPF1-206ENST00000598471 KCND2Q9NZV8 630 aa17.21■□□□□ 0.35
UPF1-206ENST00000598471 WRAP73Q9P2S5 460 aaPredicted RBP17.21■□□□□ 0.35
UPF1-206ENST00000598471 EMSYQ7Z589 1322 aa17.21■□□□□ 0.34
UPF1-206ENST00000598471 LOXHD1Q8IVV2 1947 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 MYMKA6NI61 221 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 BIN1O00499 593 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 ADCY3O60266 1144 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 LGR5O75473 907 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 CAVIN2O95810 425 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 HMGCRP04035 888 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 SARSP49591 514 aaKnown RBP17.2■□□□□ 0.34
UPF1-206ENST00000598471 SLC26A2P50443 739 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 STAT5BP51692 787 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 NLRP12P59046 1061 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 HSDL1Q3SXM5 330 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 BRDTQ58F21 947 aaPredicted RBP17.2■□□□□ 0.34
UPF1-206ENST00000598471 PXYLP1Q8TE99 480 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 DDX12PQ92771 950 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 GLG1Q92896 1179 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 FUCA2Q9BTY2 467 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 MCOLN1Q9GZU1 580 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 AP5M1Q9H0R1 490 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 EXOC1Q9NV70 894 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 MAN1B1Q9UKM7 699 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 Q9Y3F1 56 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 MAFBQ9Y5Q3 323 aaPredicted RBP17.2■□□□□ 0.34
UPF1-206ENST00000598471 DOCK5Q9H7D0 1870 aa17.2■□□□□ 0.34
UPF1-206ENST00000598471 PVALEFA0A1B0GWK0 134 aa17.19■□□□□ 0.34
UPF1-206ENST00000598471 OATP04181 439 aa17.19■□□□□ 0.34
UPF1-206ENST00000598471 CYBAP13498 195 aa17.19■□□□□ 0.34
UPF1-206ENST00000598471 CYP11B2P19099 503 aa17.19■□□□□ 0.34
UPF1-206ENST00000598471 CASP1P29466 404 aa17.19■□□□□ 0.34
UPF1-206ENST00000598471 KCNB1Q14721 858 aa17.19■□□□□ 0.34
UPF1-206ENST00000598471 GJC2Q5T442 439 aaPredicted RBP17.19■□□□□ 0.34
UPF1-206ENST00000598471 UTP14CQ5TAP6 766 aaKnown RBP17.19■□□□□ 0.34
UPF1-206ENST00000598471 UNC13DQ70J99 1090 aa17.19■□□□□ 0.34
UPF1-206ENST00000598471 PLPPR4Q7Z2D5 763 aa17.19■□□□□ 0.34
UPF1-206ENST00000598471 CCDC65Q8IXS2 484 aa17.19■□□□□ 0.34
UPF1-206ENST00000598471 SLAIN1Q8ND83 568 aa17.19■□□□□ 0.34
UPF1-206ENST00000598471 AFG1LQ8WV93 481 aa17.19■□□□□ 0.34
UPF1-206ENST00000598471 NAT10Q9H0A0 1025 aaKnown RBP17.19■□□□□ 0.34
UPF1-206ENST00000598471 SMARCAD1Q9H4L7 1026 aa17.19■□□□□ 0.34
UPF1-206ENST00000598471 NRBP2Q9NSY0 501 aa17.19■□□□□ 0.34
UPF1-206ENST00000598471 SEPT9Q9UHD8 586 aaPredicted RBP17.19■□□□□ 0.34
UPF1-206ENST00000598471 DACH1Q9UI36 760 aa17.19■□□□□ 0.34
UPF1-206ENST00000598471 TELO2Q9Y4R8 837 aa17.19■□□□□ 0.34
UPF1-206ENST00000598471 A0A087WWV3 80 aa17.18■□□□□ 0.34
UPF1-206ENST00000598471 ZNF862O60290 1169 aa17.18■□□□□ 0.34
UPF1-206ENST00000598471 TBCAO75347 108 aaKnown RBP17.18■□□□□ 0.34
UPF1-206ENST00000598471 IDEP14735 1019 aa17.18■□□□□ 0.34
UPF1-206ENST00000598471 RARRES1P49788 294 aa17.18■□□□□ 0.34
UPF1-206ENST00000598471 XKR9Q5GH70 373 aa17.18■□□□□ 0.34
UPF1-206ENST00000598471 TMEM63BQ5T3F8 832 aa17.18■□□□□ 0.34
UPF1-206ENST00000598471 DYMQ7RTS9 669 aa17.18■□□□□ 0.34
UPF1-206ENST00000598471 TLK2Q86UE8 772 aa17.18■□□□□ 0.34
UPF1-206ENST00000598471 TIPINQ9BVW5 301 aa17.18■□□□□ 0.34
UPF1-206ENST00000598471 ZNF215Q9UL58 517 aaPredicted RBP17.18■□□□□ 0.34
UPF1-206ENST00000598471 GNEQ9Y223 722 aaKnown RBP17.18■□□□□ 0.34
UPF1-206ENST00000598471 PPME1Q9Y570 386 aa17.18■□□□□ 0.34
UPF1-206ENST00000598471 DYNC1LI2O43237 492 aaPredicted RBP17.17■□□□□ 0.34
UPF1-206ENST00000598471 PPFIA4O75335 1185 aa17.17■□□□□ 0.34
UPF1-206ENST00000598471 MMP3P08254 477 aa17.17■□□□□ 0.34
UPF1-206ENST00000598471 ELNP15502 786 aa17.17■□□□□ 0.34
UPF1-206ENST00000598471 CNGA1P29973 690 aa17.17■□□□□ 0.34
UPF1-206ENST00000598471 CPT1AP50416 773 aa17.17■□□□□ 0.34
UPF1-206ENST00000598471 MORC3Q14149 939 aa17.17■□□□□ 0.34
UPF1-206ENST00000598471 GSE1Q14687 1217 aa17.17■□□□□ 0.34
UPF1-206ENST00000598471 DGKDQ16760 1214 aa17.17■□□□□ 0.34
UPF1-206ENST00000598471 ANO6Q4KMQ2 910 aa17.17■□□□□ 0.34
UPF1-206ENST00000598471 RINT1Q6NUQ1 792 aa17.17■□□□□ 0.34
UPF1-206ENST00000598471 PADI6Q6TGC4 694 aa17.17■□□□□ 0.34
UPF1-206ENST00000598471 CEP170P1Q96L14 293 aa17.17■□□□□ 0.34
UPF1-206ENST00000598471 PCYT2Q99447 389 aa17.17■□□□□ 0.34
UPF1-206ENST00000598471 SPC25Q9HBM1 224 aa17.17■□□□□ 0.34
UPF1-206ENST00000598471 PTPN22Q9Y2R2 807 aa17.17■□□□□ 0.34
UPF1-206ENST00000598471 ZBTB39O15060 712 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms