RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 NR2E1Q9Y466 385 aa11.67□□□□□ -0.54
TRIM28-210ENST00000597618 TRPV2Q9Y5S1 764 aa11.67□□□□□ -0.54
TRIM28-210ENST00000597618 KIAA1671Q9BY89 1806 aa11.66□□□□□ -0.54
TRIM28-210ENST00000597618 FGF18O76093 207 aa11.66□□□□□ -0.54
TRIM28-210ENST00000597618 PDGFBP01127 241 aaPredicted RBP11.66□□□□□ -0.54
TRIM28-210ENST00000597618 GATMP50440 423 aa11.66□□□□□ -0.54
TRIM28-210ENST00000597618 IGBP1P78318 339 aa11.66□□□□□ -0.54
TRIM28-210ENST00000597618 ANKRD54Q6NXT1 300 aa11.66□□□□□ -0.54
TRIM28-210ENST00000597618 CWC27Q6UX04 472 aaKnown RBP11.66□□□□□ -0.54
TRIM28-210ENST00000597618 TMEM184AQ6ZMB5 413 aa11.66□□□□□ -0.54
TRIM28-210ENST00000597618 THNSL1Q8IYQ7 743 aa11.66□□□□□ -0.54
TRIM28-210ENST00000597618 KREMEN2Q8NCW0 462 aa11.66□□□□□ -0.54
TRIM28-210ENST00000597618 SMARCC2Q8TAQ2 1214 aa11.66□□□□□ -0.54
TRIM28-210ENST00000597618 TNPO1Q92973 898 aaKnown RBP11.66□□□□□ -0.54
TRIM28-210ENST00000597618 CUL5Q93034 780 aa11.66□□□□□ -0.54
TRIM28-210ENST00000597618 S1PR5Q9H228 398 aa11.66□□□□□ -0.54
TRIM28-210ENST00000597618 DIAPH3Q9NSV4 1193 aa11.66□□□□□ -0.54
TRIM28-210ENST00000597618 TRPC6Q9Y210 931 aa11.66□□□□□ -0.54
TRIM28-210ENST00000597618 PLXNA3P51805 1871 aa11.66□□□□□ -0.54
TRIM28-210ENST00000597618 GSTTP1A0A1W2PQM5 241 aa11.65□□□□□ -0.54
TRIM28-210ENST00000597618 PIK3CDO00329 1044 aa11.65□□□□□ -0.54
TRIM28-210ENST00000597618 FSCN2O14926 492 aa11.65□□□□□ -0.54
TRIM28-210ENST00000597618 CYTH3O43739 400 aa11.65□□□□□ -0.54
TRIM28-210ENST00000597618 KCNA2P16389 499 aa11.65□□□□□ -0.54
TRIM28-210ENST00000597618 HOXB8P17481 243 aaPredicted RBP11.65□□□□□ -0.54
TRIM28-210ENST00000597618 TECP42680 631 aa11.65□□□□□ -0.54
TRIM28-210ENST00000597618 SARSP49591 514 aaKnown RBP11.65□□□□□ -0.54
TRIM28-210ENST00000597618 MCTP2Q6DN12 878 aa11.65□□□□□ -0.54
TRIM28-210ENST00000597618 RASGRP4Q8TDF6 673 aa11.65□□□□□ -0.54
TRIM28-210ENST00000597618 CELF4Q9BZC1 486 aaKnown RBP11.65□□□□□ -0.54
TRIM28-210ENST00000597618 TSHZ2Q9NRE2 1034 aa11.65□□□□□ -0.54
TRIM28-210ENST00000597618 TMEM260Q9NX78 707 aa11.65□□□□□ -0.54
TRIM28-210ENST00000597618 SORCS3Q9UPU3 1222 aa11.65□□□□□ -0.54
TRIM28-210ENST00000597618 LZTS1Q9Y250 596 aa11.65□□□□□ -0.54
TRIM28-210ENST00000597618 PCDHB7Q9Y5E2 793 aa11.65□□□□□ -0.54
TRIM28-210ENST00000597618 PCDHA2Q9Y5H9 948 aa11.65□□□□□ -0.54
TRIM28-210ENST00000597618 KDM3AQ9Y4C1 1321 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 KAT6AQ92794 2004 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 ZNF292O60281 2723 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 TBKBP1A7MCY6 615 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 HIP1O00291 1037 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 ATP9AO75110 1047 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 INSRRP14616 1297 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 IBSPP21815 317 aaPredicted RBP11.64□□□□□ -0.55
TRIM28-210ENST00000597618 SP100P23497 879 aaPredicted RBP11.64□□□□□ -0.55
TRIM28-210ENST00000597618 ERVFC1P60507 584 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 TMEM62Q0P6H9 643 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 TRDNQ13061 729 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 MTMR1Q13613 665 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 KCNC3Q14003 757 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 SYCE2Q6PIF2 218 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 TMEM105Q8N8V8 129 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 COLGALT1Q8NBJ5 622 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 NKD2Q969F2 451 aaPredicted RBP11.64□□□□□ -0.55
TRIM28-210ENST00000597618 ZBTB10Q96DT7 871 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 NECTIN4Q96NY8 510 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 TMX1Q9H3N1 280 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 AZI2Q9H6S1 392 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 C1orf112Q9NSG2 853 aa11.64□□□□□ -0.55
TRIM28-210ENST00000597618 PUF60Q9UHX1 559 aaKnown RBP11.64□□□□□ -0.55
TRIM28-210ENST00000597618 DOCK5Q9H7D0 1870 aa11.63□□□□□ -0.55
TRIM28-210ENST00000597618 ERICH2A1L162 156 aa11.63□□□□□ -0.55
TRIM28-210ENST00000597618 BRD1O95696 1058 aa11.63□□□□□ -0.55
TRIM28-210ENST00000597618 ITGB5P18084 799 aa11.63□□□□□ -0.55
TRIM28-210ENST00000597618 LAG3P18627 525 aa11.63□□□□□ -0.55
TRIM28-210ENST00000597618 ID4P47928 161 aa11.63□□□□□ -0.55
TRIM28-210ENST00000597618 KRT76Q01546 638 aa11.63□□□□□ -0.55
TRIM28-210ENST00000597618 HDAC1Q13547 482 aaPredicted RBP11.63□□□□□ -0.55
TRIM28-210ENST00000597618 TPRNQ4KMQ1 711 aa11.63□□□□□ -0.55
TRIM28-210ENST00000597618 PLPP4Q5VZY2 271 aa11.63□□□□□ -0.55
TRIM28-210ENST00000597618 ASTLQ6HA08 431 aaPredicted RBP11.63□□□□□ -0.55
TRIM28-210ENST00000597618 LLGL2Q6P1M3 1020 aa11.63□□□□□ -0.55
TRIM28-210ENST00000597618 USP17L6PQ6QN14 398 aa11.63□□□□□ -0.55
TRIM28-210ENST00000597618 CYB5R4Q7L1T6 521 aa11.63□□□□□ -0.55
TRIM28-210ENST00000597618 NME8Q8N427 588 aa11.63□□□□□ -0.55
TRIM28-210ENST00000597618 CASP10Q92851 521 aa11.63□□□□□ -0.55
TRIM28-210ENST00000597618 TCF25Q9BQ70 676 aa11.63□□□□□ -0.55
TRIM28-210ENST00000597618 APOL5Q9BWW9 433 aa11.63□□□□□ -0.55
TRIM28-210ENST00000597618 JPH1Q9HDC5 661 aaPredicted RBP11.63□□□□□ -0.55
TRIM28-210ENST00000597618 NGRNQ9NPE2 291 aaKnown RBP11.63□□□□□ -0.55
TRIM28-210ENST00000597618 ENTPD7Q9NQZ7 604 aa11.63□□□□□ -0.55
TRIM28-210ENST00000597618 PLXNA4Q9HCM2 1894 aa11.63□□□□□ -0.55
TRIM28-210ENST00000597618 DMXL1Q9Y485 3027 aa11.62□□□□□ -0.55
TRIM28-210ENST00000597618 SMIM35A0A1B0GVV1 85 aa11.62□□□□□ -0.55
TRIM28-210ENST00000597618 DENND3A2RUS2 1198 aa11.62□□□□□ -0.55
TRIM28-210ENST00000597618 MEIS2O14770 477 aa11.62□□□□□ -0.55
TRIM28-210ENST00000597618 IFIT3O14879 490 aaKnown RBP11.62□□□□□ -0.55
TRIM28-210ENST00000597618 PLCB3Q01970 1234 aa11.62□□□□□ -0.55
TRIM28-210ENST00000597618 ITIH3Q06033 890 aa11.62□□□□□ -0.55
TRIM28-210ENST00000597618 TROAPQ12815 778 aa11.62□□□□□ -0.55
TRIM28-210ENST00000597618 NFX1Q12986 1120 aaKnown RBP11.62□□□□□ -0.55
TRIM28-210ENST00000597618 TMEM266Q2M3C6 531 aa11.62□□□□□ -0.55
TRIM28-210ENST00000597618 ODR4Q5SWX8 454 aa11.62□□□□□ -0.55
TRIM28-210ENST00000597618 CES5AQ6NT32 575 aa11.62□□□□□ -0.55
TRIM28-210ENST00000597618 SLC24A5Q71RS6 500 aa11.62□□□□□ -0.55
TRIM28-210ENST00000597618 FRMD5Q7Z6J6 570 aa11.62□□□□□ -0.55
TRIM28-210ENST00000597618 PIBF1Q8WXW3 757 aa11.62□□□□□ -0.55
TRIM28-210ENST00000597618 MRPS27Q92552 414 aaKnown RBP11.62□□□□□ -0.55
TRIM28-210ENST00000597618 RRP36Q96EU6 259 aaKnown RBP11.62□□□□□ -0.55
TRIM28-210ENST00000597618 LNPKQ9C0E8 428 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms