RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 BCAS3Q9H6U6 928 aa16.98■□□□□ 0.31
TRIM28-209ENST00000597423 MAFBQ9Y5Q3 323 aaPredicted RBP16.98■□□□□ 0.31
TRIM28-209ENST00000597423 MYMKA6NI61 221 aa16.97■□□□□ 0.31
TRIM28-209ENST00000597423 IGHA2P01877 340 aa16.97■□□□□ 0.31
TRIM28-209ENST00000597423 PRR29P0C7W0 189 aa16.97■□□□□ 0.31
TRIM28-209ENST00000597423 ZNF865P0CJ78 1059 aaPredicted RBP16.97■□□□□ 0.31
TRIM28-209ENST00000597423 AKR1A1P14550 325 aa16.97■□□□□ 0.31
TRIM28-209ENST00000597423 SMPD1P17405 629 aa16.97■□□□□ 0.31
TRIM28-209ENST00000597423 TCF7P36402 384 aaPredicted RBP16.97■□□□□ 0.31
TRIM28-209ENST00000597423 ARHGAP1Q07960 439 aa16.97■□□□□ 0.31
TRIM28-209ENST00000597423 PSMD2Q13200 908 aa16.97■□□□□ 0.31
TRIM28-209ENST00000597423 PRAMEF19Q5SWL8 479 aa16.97■□□□□ 0.31
TRIM28-209ENST00000597423 EXOC8Q8IYI6 725 aa16.97■□□□□ 0.31
TRIM28-209ENST00000597423 OR6J1Q8NGC5 347 aa16.97■□□□□ 0.31
TRIM28-209ENST00000597423 ZNF296Q8WUU4 475 aaPredicted RBP16.97■□□□□ 0.31
TRIM28-209ENST00000597423 DDX12PQ92771 950 aa16.97■□□□□ 0.31
TRIM28-209ENST00000597423 ERCC4Q92889 916 aaPredicted RBP16.97■□□□□ 0.31
TRIM28-209ENST00000597423 GLG1Q92896 1179 aa16.97■□□□□ 0.31
TRIM28-209ENST00000597423 TIPINQ9BVW5 301 aa16.97■□□□□ 0.31
TRIM28-209ENST00000597423 EXOC1Q9NV70 894 aa16.97■□□□□ 0.31
TRIM28-209ENST00000597423 MAN1B1Q9UKM7 699 aa16.97■□□□□ 0.31
TRIM28-209ENST00000597423 PPME1Q9Y570 386 aa16.97■□□□□ 0.31
TRIM28-209ENST00000597423 LCTP09848 1927 aa16.96■□□□□ 0.31
TRIM28-209ENST00000597423 BIN1O00499 593 aa16.96■□□□□ 0.31
TRIM28-209ENST00000597423 LGR5O75473 907 aa16.96■□□□□ 0.31
TRIM28-209ENST00000597423 CYP11B2P19099 503 aa16.96■□□□□ 0.31
TRIM28-209ENST00000597423 PPP1R2P41236 205 aa16.96■□□□□ 0.31
TRIM28-209ENST00000597423 MORC3Q14149 939 aa16.96■□□□□ 0.31
TRIM28-209ENST00000597423 XKR9Q5GH70 373 aa16.96■□□□□ 0.31
TRIM28-209ENST00000597423 UNC13DQ70J99 1090 aa16.96■□□□□ 0.31
TRIM28-209ENST00000597423 PXYLP1Q8TE99 480 aa16.96■□□□□ 0.31
TRIM28-209ENST00000597423 FUCA2Q9BTY2 467 aa16.96■□□□□ 0.31
TRIM28-209ENST00000597423 SPC25Q9HBM1 224 aa16.96■□□□□ 0.31
TRIM28-209ENST00000597423 A0A087WWV3 80 aa16.95■□□□□ 0.3
TRIM28-209ENST00000597423 GOLGA6L3A6NEY3 463 aa16.95■□□□□ 0.3
TRIM28-209ENST00000597423 DYNC1LI2O43237 492 aaPredicted RBP16.95■□□□□ 0.3
TRIM28-209ENST00000597423 ADCY3O60266 1144 aa16.95■□□□□ 0.3
TRIM28-209ENST00000597423 TBCAO75347 108 aaKnown RBP16.95■□□□□ 0.3
TRIM28-209ENST00000597423 IDEP14735 1019 aa16.95■□□□□ 0.3
TRIM28-209ENST00000597423 STIM1Q13586 685 aa16.95■□□□□ 0.3
TRIM28-209ENST00000597423 DGKDQ16760 1214 aa16.95■□□□□ 0.3
TRIM28-209ENST00000597423 HSDL1Q3SXM5 330 aa16.95■□□□□ 0.3
TRIM28-209ENST00000597423 UTP14CQ5TAP6 766 aaKnown RBP16.95■□□□□ 0.3
TRIM28-209ENST00000597423 RINT1Q6NUQ1 792 aa16.95■□□□□ 0.3
TRIM28-209ENST00000597423 PADI6Q6TGC4 694 aa16.95■□□□□ 0.3
TRIM28-209ENST00000597423 DYMQ7RTS9 669 aa16.95■□□□□ 0.3
TRIM28-209ENST00000597423 CCDC60Q8IWA6 550 aaPredicted RBP16.95■□□□□ 0.3
TRIM28-209ENST00000597423 LRRC15Q8TF66 581 aa16.95■□□□□ 0.3
TRIM28-209ENST00000597423 COPS5Q92905 334 aa16.95■□□□□ 0.3
TRIM28-209ENST00000597423 CEP170P1Q96L14 293 aa16.95■□□□□ 0.3
TRIM28-209ENST00000597423 PANK4Q9NVE7 773 aa16.95■□□□□ 0.3
TRIM28-209ENST00000597423 KCNG1Q9UIX4 513 aa16.95■□□□□ 0.3
TRIM28-209ENST00000597423 COL4A3BPQ9Y5P4 624 aa16.95■□□□□ 0.3
TRIM28-209ENST00000597423 KPNA6O60684 536 aa16.94■□□□□ 0.3
TRIM28-209ENST00000597423 RHOBTB3O94955 611 aa16.94■□□□□ 0.3
TRIM28-209ENST00000597423 OATP04181 439 aa16.94■□□□□ 0.3
TRIM28-209ENST00000597423 GAP43P17677 238 aa16.94■□□□□ 0.3
TRIM28-209ENST00000597423 GUCY2CP25092 1073 aa16.94■□□□□ 0.3
TRIM28-209ENST00000597423 RARRES1P49788 294 aa16.94■□□□□ 0.3
TRIM28-209ENST00000597423 CPT1AP50416 773 aa16.94■□□□□ 0.3
TRIM28-209ENST00000597423 PRKCEQ02156 737 aa16.94■□□□□ 0.3
TRIM28-209ENST00000597423 UGCGQ16739 394 aa16.94■□□□□ 0.3
TRIM28-209ENST00000597423 KMT5BQ4FZB7 885 aa16.94■□□□□ 0.3
TRIM28-209ENST00000597423 ANO6Q4KMQ2 910 aa16.94■□□□□ 0.3
TRIM28-209ENST00000597423 ZNF658Q5TYW1 1059 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-209ENST00000597423 C1orf186Q6ZWK4 172 aa16.94■□□□□ 0.3
TRIM28-209ENST00000597423 AFG1LQ8WV93 481 aa16.94■□□□□ 0.3
TRIM28-209ENST00000597423 BBXQ8WY36 941 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-209ENST00000597423 TRIB2Q92519 343 aa16.94■□□□□ 0.3
TRIM28-209ENST00000597423 NIFKQ9BYG3 293 aaKnown RBP16.94■□□□□ 0.3
TRIM28-209ENST00000597423 WBP1LQ9NX94 342 aa16.94■□□□□ 0.3
TRIM28-209ENST00000597423 ERAP1Q9NZ08 941 aa16.94■□□□□ 0.3
TRIM28-209ENST00000597423 WRAP73Q9P2S5 460 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-209ENST00000597423 ZNF215Q9UL58 517 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-209ENST00000597423 EMSYQ7Z589 1322 aa16.94■□□□□ 0.3
TRIM28-209ENST00000597423 IGSF9BQ9UPX0 1349 aa16.94■□□□□ 0.3
TRIM28-209ENST00000597423 PLXNA1Q9UIW2 1896 aa16.93■□□□□ 0.3
TRIM28-209ENST00000597423 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-209ENST00000597423 DUSP11O75319 330 aaKnown RBP16.93■□□□□ 0.3
TRIM28-209ENST00000597423 KIF20AO95235 890 aa16.93■□□□□ 0.3
TRIM28-209ENST00000597423 HMGCRP04035 888 aa16.93■□□□□ 0.3
TRIM28-209ENST00000597423 CASP1P29466 404 aa16.93■□□□□ 0.3
TRIM28-209ENST00000597423 CNGA1P29973 690 aa16.93■□□□□ 0.3
TRIM28-209ENST00000597423 GIT2Q14161 759 aa16.93■□□□□ 0.3
TRIM28-209ENST00000597423 ARSHQ5FYA8 562 aa16.93■□□□□ 0.3
TRIM28-209ENST00000597423 HERC4Q5GLZ8 1057 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-209ENST00000597423 ISM2Q6H9L7 571 aa16.93■□□□□ 0.3
TRIM28-209ENST00000597423 SLAIN1Q8ND83 568 aa16.93■□□□□ 0.3
TRIM28-209ENST00000597423 JPH2Q9BR39 696 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-209ENST00000597423 ZHX3Q9H4I2 956 aa16.93■□□□□ 0.3
TRIM28-209ENST00000597423 SEPT9Q9UHD8 586 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-209ENST00000597423 ODF2LQ9ULJ1 636 aa16.93■□□□□ 0.3
TRIM28-209ENST00000597423 GNEQ9Y223 722 aaKnown RBP16.93■□□□□ 0.3
TRIM28-209ENST00000597423 A6NJR5 290 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 SMTNL1A8MU46 457 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 ZBTB39O15060 712 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 SEPT4O43236 478 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 KLRC4O43908 158 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 ZNF862O60290 1169 aa16.92■□□□□ 0.3
TRIM28-209ENST00000597423 ZEB2O60315 1214 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms