RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 SLC26A2P50443 739 aa12.58□□□□□ -0.4
VRK3-210ENST00000596121 NBR1Q14596 966 aa12.58□□□□□ -0.4
VRK3-210ENST00000596121 SAFBQ15424 915 aaKnown RBP eCLIP12.58□□□□□ -0.4
VRK3-210ENST00000596121 ZNF174Q15697 407 aa12.58□□□□□ -0.4
VRK3-210ENST00000596121 MTHFD1LQ6UB35 978 aa12.58□□□□□ -0.4
VRK3-210ENST00000596121 NOSTRINQ8IVI9 506 aa12.58□□□□□ -0.4
VRK3-210ENST00000596121 CCDC155Q8N6L0 562 aa12.58□□□□□ -0.4
VRK3-210ENST00000596121 DNAJB3Q8WWF6 145 aa12.58□□□□□ -0.4
VRK3-210ENST00000596121 RNPC3Q96LT9 517 aaKnown RBP12.58□□□□□ -0.4
VRK3-210ENST00000596121 MTMR9Q96QG7 549 aa12.58□□□□□ -0.4
VRK3-210ENST00000596121 WRAP73Q9P2S5 460 aaPredicted RBP12.58□□□□□ -0.4
VRK3-210ENST00000596121 TUBE1Q9UJT0 475 aa12.58□□□□□ -0.4
VRK3-210ENST00000596121 SAMM50Q9Y512 469 aa12.58□□□□□ -0.4
VRK3-210ENST00000596121 RRN3P2A6NIE6 340 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 RSPH10B2B2RC85 870 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 TBX3O15119 743 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 HBP1O60381 514 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 RSPH10BP0C881 870 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 KLRC1P26715 233 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 SFNP31947 248 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 RFC2P35250 354 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 JAK3P52333 1124 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 MGAT3Q09327 533 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 PPP2R5CQ13362 524 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 FAM26DQ5JW98 314 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 PSRC1Q6PGN9 363 aaPredicted RBP12.57□□□□□ -0.4
VRK3-210ENST00000596121 MIER3Q7Z3K6 550 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 RPUSD2Q8IZ73 545 aaKnown RBP12.57□□□□□ -0.4
VRK3-210ENST00000596121 C4orf32Q8N8J7 132 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 BANK1Q8NDB2 785 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 NAP1L4Q99733 375 aaKnown RBP12.57□□□□□ -0.4
VRK3-210ENST00000596121 SMC3Q9UQE7 1217 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 PCDHA2Q9Y5H9 948 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 KAT6AQ92794 2004 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 TANC1Q9C0D5 1861 aa12.57□□□□□ -0.4
VRK3-210ENST00000596121 WDR81Q562E7 1941 aa12.56□□□□□ -0.4
VRK3-210ENST00000596121 C22orf31O95567 290 aa12.56□□□□□ -0.4
VRK3-210ENST00000596121 OATP04181 439 aa12.56□□□□□ -0.4
VRK3-210ENST00000596121 MCM7P33993 719 aa12.56□□□□□ -0.4
VRK3-210ENST00000596121 PRKCEQ02156 737 aa12.56□□□□□ -0.4
VRK3-210ENST00000596121 TARBP2Q15633 366 aaKnown RBP12.56□□□□□ -0.4
VRK3-210ENST00000596121 CALCRLQ16602 461 aa12.56□□□□□ -0.4
VRK3-210ENST00000596121 RPAINQ86UA6 219 aa12.56□□□□□ -0.4
VRK3-210ENST00000596121 RDM1Q8NG50 284 aa12.56□□□□□ -0.4
VRK3-210ENST00000596121 BBXQ8WY36 941 aaPredicted RBP12.56□□□□□ -0.4
VRK3-210ENST00000596121 CEP89Q96ST8 783 aa12.56□□□□□ -0.4
VRK3-210ENST00000596121 SH2D3AQ9BRG2 576 aa12.56□□□□□ -0.4
VRK3-210ENST00000596121 FTOQ9C0B1 505 aaKnown RBP eCLIP12.56□□□□□ -0.4
VRK3-210ENST00000596121 FAM49AQ9H0Q0 323 aaPredicted RBP12.56□□□□□ -0.4
VRK3-210ENST00000596121 RGL1Q9NZL6 768 aa12.56□□□□□ -0.4
VRK3-210ENST00000596121 ZBTB39O15060 712 aa12.55□□□□□ -0.4
VRK3-210ENST00000596121 NEMFO60524 1076 aa12.55□□□□□ -0.4
VRK3-210ENST00000596121 PFKMP08237 780 aa12.55□□□□□ -0.4
VRK3-210ENST00000596121 PBX2P40425 430 aa12.55□□□□□ -0.4
VRK3-210ENST00000596121 TXKP42681 527 aa12.55□□□□□ -0.4
VRK3-210ENST00000596121 TMEM62Q0P6H9 643 aa12.55□□□□□ -0.4
VRK3-210ENST00000596121 MKRN4PQ13434 485 aaPredicted RBP12.55□□□□□ -0.4
VRK3-210ENST00000596121 ZNF484Q5JVG2 852 aa12.55□□□□□ -0.4
VRK3-210ENST00000596121 TTC38Q5R3I4 469 aa12.55□□□□□ -0.4
VRK3-210ENST00000596121 TAF2Q6P1X5 1199 aa12.55□□□□□ -0.4
VRK3-210ENST00000596121 CKAP2LQ8IYA6 745 aa12.55□□□□□ -0.4
VRK3-210ENST00000596121 KIAA0319LQ8IZA0 1049 aa12.55□□□□□ -0.4
VRK3-210ENST00000596121 ZNF579Q8NAF0 562 aaKnown RBP12.55□□□□□ -0.4
VRK3-210ENST00000596121 DBF4BQ8NFT6 615 aa12.55□□□□□ -0.4
VRK3-210ENST00000596121 SNX21Q969T3 373 aa12.55□□□□□ -0.4
VRK3-210ENST00000596121 CDHR5Q9HBB8 845 aa12.55□□□□□ -0.4
VRK3-210ENST00000596121 FOXD4L1Q9NU39 408 aa12.55□□□□□ -0.4
VRK3-210ENST00000596121 TCEAL9Q9UHQ7 104 aa12.55□□□□□ -0.4
VRK3-210ENST00000596121 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.55□□□□□ -0.4
VRK3-210ENST00000596121 PCDHB6Q9Y5E3 794 aa12.55□□□□□ -0.4
VRK3-210ENST00000596121 COL1A2P08123 1366 aa12.55□□□□□ -0.4
VRK3-210ENST00000596121 MYH9P35579 1960 aaKnown RBP12.54□□□□□ -0.4
VRK3-210ENST00000596121 SMIM35A0A1B0GVV1 85 aa12.54□□□□□ -0.4
VRK3-210ENST00000596121 K7ELQ4 463 aaPredicted RBP12.54□□□□□ -0.4
VRK3-210ENST00000596121 CAND2O75155 1236 aa12.54□□□□□ -0.4
VRK3-210ENST00000596121 SLITRK3O94933 977 aa12.54□□□□□ -0.4
VRK3-210ENST00000596121 LPIN1Q14693 890 aa12.54□□□□□ -0.4
VRK3-210ENST00000596121 EPHA7Q15375 998 aa12.54□□□□□ -0.4
VRK3-210ENST00000596121 PLEKHG4Q58EX7 1191 aa12.54□□□□□ -0.4
VRK3-210ENST00000596121 LARP1BQ659C4 914 aaKnown RBP12.54□□□□□ -0.4
VRK3-210ENST00000596121 NCAPH2Q6IBW4 605 aa12.54□□□□□ -0.4
VRK3-210ENST00000596121 ANO5Q75V66 913 aa12.54□□□□□ -0.4
VRK3-210ENST00000596121 Q7L0L9 218 aa12.54□□□□□ -0.4
VRK3-210ENST00000596121 TMCO2Q7Z6W1 182 aaPredicted RBP12.54□□□□□ -0.4
VRK3-210ENST00000596121 SLFN12Q8IYM2 578 aa12.54□□□□□ -0.4
VRK3-210ENST00000596121 LINC01465Q8N7H1 131 aa12.54□□□□□ -0.4
VRK3-210ENST00000596121 DYDC2Q96IM9 177 aa12.54□□□□□ -0.4
VRK3-210ENST00000596121 NIFKQ9BYG3 293 aaKnown RBP12.54□□□□□ -0.4
VRK3-210ENST00000596121 TTC12Q9H892 705 aaPredicted RBP12.54□□□□□ -0.4
VRK3-210ENST00000596121 PCDHA12Q9UN75 941 aa12.54□□□□□ -0.4
VRK3-210ENST00000596121 CDY2AQ9Y6F7 541 aa12.54□□□□□ -0.4
VRK3-210ENST00000596121 A0A087WWV3 80 aa12.53□□□□□ -0.4
VRK3-210ENST00000596121 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.53□□□□□ -0.4
VRK3-210ENST00000596121 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.53□□□□□ -0.4
VRK3-210ENST00000596121 DDX11L8A8MPP1 907 aa12.53□□□□□ -0.4
VRK3-210ENST00000596121 MARCH6O60337 910 aa12.53□□□□□ -0.4
VRK3-210ENST00000596121 BAG4O95429 457 aaKnown RBP12.53□□□□□ -0.4
VRK3-210ENST00000596121 MYOGP15173 224 aa12.53□□□□□ -0.4
VRK3-210ENST00000596121 QARSP47897 775 aaKnown RBP12.53□□□□□ -0.4
VRK3-210ENST00000596121 TRAPPC10P48553 1259 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms