RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 ZBED4O75132 1171 aa21.69■■□□□ 1.06
CLIP3-206ENST00000593074 LMNB1P20700 586 aa21.69■■□□□ 1.06
CLIP3-206ENST00000593074 KIF11P52732 1056 aa21.69■■□□□ 1.06
CLIP3-206ENST00000593074 CYP27A1Q02318 531 aa21.69■■□□□ 1.06
CLIP3-206ENST00000593074 SPA17Q15506 151 aa21.69■■□□□ 1.06
CLIP3-206ENST00000593074 NIPA1Q7RTP0 329 aa21.69■■□□□ 1.06
CLIP3-206ENST00000593074 CACNA2D4Q7Z3S7 1137 aa21.69■■□□□ 1.06
CLIP3-206ENST00000593074 KCND2Q9NZV8 630 aa21.69■■□□□ 1.06
CLIP3-206ENST00000593074 EIF3DO15371 548 aaKnown RBP eCLIP21.68■■□□□ 1.06
CLIP3-206ENST00000593074 PRPF6O94906 941 aaKnown RBP21.68■■□□□ 1.06
CLIP3-206ENST00000593074 FDX1P10109 184 aa21.68■■□□□ 1.06
CLIP3-206ENST00000593074 ITGB5P18084 799 aa21.68■■□□□ 1.06
CLIP3-206ENST00000593074 PTPRAP18433 802 aa21.68■■□□□ 1.06
CLIP3-206ENST00000593074 EIF4A3P38919 411 aaKnown RBP21.68■■□□□ 1.06
CLIP3-206ENST00000593074 ZNF280CQ8ND82 737 aa21.68■■□□□ 1.06
CLIP3-206ENST00000593074 FAM53CQ9NYF3 392 aa21.68■■□□□ 1.06
CLIP3-206ENST00000593074 MAP3K20Q9NYL2 800 aaKnown RBP21.68■■□□□ 1.06
CLIP3-206ENST00000593074 WRAP73Q9P2S5 460 aaPredicted RBP21.68■■□□□ 1.06
CLIP3-206ENST00000593074 GCNT3O95395 438 aa21.68■■□□□ 1.06
CLIP3-206ENST00000593074 ZSCAN20P17040 1043 aaPredicted RBP21.68■■□□□ 1.06
CLIP3-206ENST00000593074 MAPK8IP2Q13387 824 aaPredicted RBP21.68■■□□□ 1.06
CLIP3-206ENST00000593074 TRAPPC11Q7Z392 1133 aa21.68■■□□□ 1.06
CLIP3-206ENST00000593074 SAMD3Q8N6K7 520 aa21.68■■□□□ 1.06
CLIP3-206ENST00000593074 NEK9Q8TD19 979 aa21.68■■□□□ 1.06
CLIP3-206ENST00000593074 ZFP91Q96JP5 570 aaPredicted RBP21.68■■□□□ 1.06
CLIP3-206ENST00000593074 NACC1Q96RE7 527 aa21.68■■□□□ 1.06
CLIP3-206ENST00000593074 LSM14BQ9BX40 385 aaKnown RBP21.68■■□□□ 1.06
CLIP3-206ENST00000593074 MYO6Q9UM54 1294 aa21.68■■□□□ 1.06
CLIP3-206ENST00000593074 DOCK1Q14185 1865 aa21.68■■□□□ 1.06
CLIP3-206ENST00000593074 SSU72P8A0A1W2PR75 194 aa21.67■■□□□ 1.06
CLIP3-206ENST00000593074 ZNF131P52739 623 aa21.67■■□□□ 1.06
CLIP3-206ENST00000593074 TUBB4BP68371 445 aa21.67■■□□□ 1.06
CLIP3-206ENST00000593074 KIF5AQ12840 1032 aa21.67■■□□□ 1.06
CLIP3-206ENST00000593074 ASTE1Q2TB18 679 aaPredicted RBP21.67■■□□□ 1.06
CLIP3-206ENST00000593074 HGSNATQ68CP4 663 aa21.67■■□□□ 1.06
CLIP3-206ENST00000593074 IFIH1Q9BYX4 1025 aaKnown RBP21.67■■□□□ 1.06
CLIP3-206ENST00000593074 BCAS3Q9H6U6 928 aa21.67■■□□□ 1.06
CLIP3-206ENST00000593074 GGA3Q9NZ52 723 aa21.67■■□□□ 1.06
CLIP3-206ENST00000593074 PUF60Q9UHX1 559 aaKnown RBP21.67■■□□□ 1.06
CLIP3-206ENST00000593074 PPP2R3BQ9Y5P8 575 aa21.67■■□□□ 1.06
CLIP3-206ENST00000593074 SLC16A3O15427 465 aaKnown RBP21.67■■□□□ 1.06
CLIP3-206ENST00000593074 FAM13AO94988 1023 aa21.67■■□□□ 1.06
CLIP3-206ENST00000593074 EPS15P42566 896 aa21.67■■□□□ 1.06
CLIP3-206ENST00000593074 CBX1P83916 185 aa21.67■■□□□ 1.06
CLIP3-206ENST00000593074 KCNH2Q12809 1159 aa21.67■■□□□ 1.06
CLIP3-206ENST00000593074 GLIPR1L2Q4G1C9 344 aa21.67■■□□□ 1.06
CLIP3-206ENST00000593074 PAPD7Q5XG87 772 aaKnown RBP21.67■■□□□ 1.06
CLIP3-206ENST00000593074 DEF6Q9H4E7 631 aa21.67■■□□□ 1.06
CLIP3-206ENST00000593074 PARVGQ9HBI0 331 aa21.67■■□□□ 1.06
CLIP3-206ENST00000593074 SEL1LQ9UBV2 794 aa21.67■■□□□ 1.06
CLIP3-206ENST00000593074 ARMCX3Q9UH62 379 aaPredicted RBP21.67■■□□□ 1.06
CLIP3-206ENST00000593074 ZMYM2Q9UBW7 1377 aa21.66■■□□□ 1.06
CLIP3-206ENST00000593074 ZBTB39O15060 712 aa21.66■■□□□ 1.06
CLIP3-206ENST00000593074 ZRANB2O95218 330 aaKnown RBP eCLIP21.66■■□□□ 1.06
CLIP3-206ENST00000593074 NR3C1P04150 777 aa21.66■■□□□ 1.06
CLIP3-206ENST00000593074 MUM1L1Q5H9M0 696 aa21.66■■□□□ 1.06
CLIP3-206ENST00000593074 IL31RAQ8NI17 732 aa21.66■■□□□ 1.06
CLIP3-206ENST00000593074 LXNQ9BS40 222 aa21.66■■□□□ 1.06
CLIP3-206ENST00000593074 EPC1Q9H2F5 836 aa21.66■■□□□ 1.06
CLIP3-206ENST00000593074 KCNH7Q9NS40 1196 aa21.66■■□□□ 1.06
CLIP3-206ENST00000593074 HOMER2Q9NSB8 354 aa21.66■■□□□ 1.06
CLIP3-206ENST00000593074 ODF2LQ9ULJ1 636 aa21.66■■□□□ 1.06
CLIP3-206ENST00000593074 PCDHA13Q9Y5I0 950 aa21.66■■□□□ 1.06
CLIP3-206ENST00000593074 ZHX2Q9Y6X8 837 aa21.66■■□□□ 1.06
CLIP3-206ENST00000593074 UBE4BO95155 1302 aa21.66■■□□□ 1.06
CLIP3-206ENST00000593074 PARP14Q460N5 1801 aa21.66■■□□□ 1.06
CLIP3-206ENST00000593074 ANO9A1A5B4 782 aa21.65■■□□□ 1.06
CLIP3-206ENST00000593074 RPL13P26373 211 aaKnown RBP21.65■■□□□ 1.06
CLIP3-206ENST00000593074 NFIL3Q16649 462 aa21.65■■□□□ 1.06
CLIP3-206ENST00000593074 PCNX4Q63HM2 1172 aa21.65■■□□□ 1.06
CLIP3-206ENST00000593074 FIZ1Q96SL8 496 aa21.65■■□□□ 1.06
CLIP3-206ENST00000593074 GANQ9H2C0 597 aa21.65■■□□□ 1.06
CLIP3-206ENST00000593074 ZSWIM4Q9H7M6 989 aa21.65■■□□□ 1.06
CLIP3-206ENST00000593074 VWA5AO00534 786 aa21.65■■□□□ 1.06
CLIP3-206ENST00000593074 TFRCP02786 760 aaKnown RBP21.65■■□□□ 1.06
CLIP3-206ENST00000593074 HIRAP54198 1017 aaPredicted RBP21.65■■□□□ 1.06
CLIP3-206ENST00000593074 TMCO3Q6UWJ1 677 aa21.65■■□□□ 1.06
CLIP3-206ENST00000593074 SYTL5Q8TDW5 730 aaPredicted RBP21.65■■□□□ 1.06
CLIP3-206ENST00000593074 SECISBP2LQ93073 1101 aaKnown RBP21.65■■□□□ 1.06
CLIP3-206ENST00000593074 CRACR2AQ9BSW2 395 aa21.65■■□□□ 1.06
CLIP3-206ENST00000593074 SPON1Q9HCB6 807 aa21.65■■□□□ 1.06
CLIP3-206ENST00000593074 NLRC4Q9NPP4 1024 aa21.65■■□□□ 1.06
CLIP3-206ENST00000593074 FZD1Q9UP38 647 aa21.65■■□□□ 1.06
CLIP3-206ENST00000593074 UBIAD1Q9Y5Z9 338 aa21.65■■□□□ 1.06
CLIP3-206ENST00000593074 DUSP10Q9Y6W6 482 aa21.65■■□□□ 1.06
CLIP3-206ENST00000593074 SFI1A8K8P3 1242 aa21.64■■□□□ 1.05
CLIP3-206ENST00000593074 C19orf81C9J6K1 198 aa21.64■■□□□ 1.05
CLIP3-206ENST00000593074 RBAK-RBAKDNI3L0D1 243 aa21.64■■□□□ 1.05
CLIP3-206ENST00000593074 TGFB1I1O43294 461 aa21.64■■□□□ 1.05
CLIP3-206ENST00000593074 AKR1B10O60218 316 aa21.64■■□□□ 1.05
CLIP3-206ENST00000593074 TLR2O60603 784 aa21.64■■□□□ 1.05
CLIP3-206ENST00000593074 USO1O60763 962 aaKnown RBP21.64■■□□□ 1.05
CLIP3-206ENST00000593074 AKAP3O75969 853 aa21.64■■□□□ 1.05
CLIP3-206ENST00000593074 ATP1A1P05023 1023 aaKnown RBP21.64■■□□□ 1.05
CLIP3-206ENST00000593074 POLR2FP61218 127 aaKnown RBP21.64■■□□□ 1.05
CLIP3-206ENST00000593074 KCNA1Q09470 495 aa21.64■■□□□ 1.05
CLIP3-206ENST00000593074 SUPT20HL1Q3ZLR7 823 aa21.64■■□□□ 1.05
CLIP3-206ENST00000593074 SFMBT2Q5VUG0 894 aa21.64■■□□□ 1.05
CLIP3-206ENST00000593074 MYCT1Q8N699 235 aa21.64■■□□□ 1.05
CLIP3-206ENST00000593074 KLRG1Q96E93 195 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms