RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 SIK3Q9Y2K2 1263 aa12.43□□□□□ -0.42
LIG3-204ENST00000585740 EPN1Q9Y6I3 576 aaPredicted RBP12.43□□□□□ -0.42
LIG3-204ENST00000585740 ARHGEF35A5YM69 484 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 MAFGO15525 162 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 LYPLA2O95372 231 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 MAPTP10636 758 aaKnown RBP12.42□□□□□ -0.42
LIG3-204ENST00000585740 ITGB5P18084 799 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 GUCY2CP25092 1073 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 CCND2P30279 289 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 HNRNPH3P31942 346 aaKnown RBP12.42□□□□□ -0.42
LIG3-204ENST00000585740 SFNP31947 248 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 RGS19P49795 217 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 JAK3P52333 1124 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 ZNF131P52739 623 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 CACNB1Q02641 598 aaPredicted RBP12.42□□□□□ -0.42
LIG3-204ENST00000585740 ADAM9Q13443 819 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 MTMR1Q13613 665 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 ALCAMQ13740 583 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 MTF1Q14872 753 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 PGM5Q15124 567 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 MUM1L1Q5H9M0 696 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 SH3D19Q5HYK7 790 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 ARHGEF16Q5VV41 709 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 CATSPERGQ6ZRH7 1159 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 NLRX1Q86UT6 975 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 TRIM59Q8IWR1 403 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 GLIS3Q8NEA6 775 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 REPS2Q8NFH8 660 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 NEK11Q8NG66 645 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 GOLGA5Q8TBA6 731 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 ZKSCAN4Q969J2 545 aaPredicted RBP12.42□□□□□ -0.42
LIG3-204ENST00000585740 L3MBTL3Q96JM7 780 aaPredicted RBP12.42□□□□□ -0.42
LIG3-204ENST00000585740 TAAR1Q96RJ0 339 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 DESI2Q9BSY9 194 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 MRPL44Q9H9J2 332 aaKnown RBP12.42□□□□□ -0.42
LIG3-204ENST00000585740 PARVGQ9HBI0 331 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 PXMP2Q9NR77 195 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 KCNH7Q9NS40 1196 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 HOXC10Q9NYD6 342 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 DBR1Q9UK59 544 aaKnown RBP12.42□□□□□ -0.42
LIG3-204ENST00000585740 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.42□□□□□ -0.42
LIG3-204ENST00000585740 ZHX2Q9Y6X8 837 aa12.42□□□□□ -0.42
LIG3-204ENST00000585740 LOC285556D6RIA3 1793 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 WDR81Q562E7 1941 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 RNF225M0QZC1 329 aaPredicted RBP12.41□□□□□ -0.42
LIG3-204ENST00000585740 DKC1O60832 514 aaKnown RBP eCLIP12.41□□□□□ -0.42
LIG3-204ENST00000585740 STAM2O75886 525 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 NDUFA10O95299 355 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 GCNT3O95395 438 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 EPB41P11171 864 aaKnown RBP12.41□□□□□ -0.42
LIG3-204ENST00000585740 NR2F2P24468 414 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 EPS15P42566 896 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 HMGCS2P54868 508 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 KRT76Q01546 638 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 RAD51AP2Q09MP3 1159 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 TXLNBQ8N3L3 684 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 MYCT1Q8N699 235 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.41□□□□□ -0.42
LIG3-204ENST00000585740 GPRASP2Q96D09 838 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 RMDN3Q96TC7 470 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 PDCD2LQ9BRP1 358 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 LXNQ9BS40 222 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 HAUS4Q9H6D7 363 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 MMRN2Q9H8L6 949 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 HOMER2Q9NSB8 354 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 ABT1Q9ULW3 272 aaKnown RBP12.41□□□□□ -0.42
LIG3-204ENST00000585740 AFG3L2Q9Y4W6 797 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 PCDHB13Q9Y5F0 798 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 PTPRFP10586 1907 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 KIAA1217Q5T5P2 1943 aa12.41□□□□□ -0.42
LIG3-204ENST00000585740 SSC5DA1L4H1 1573 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 EIF3CLB5ME19 914 aaKnown RBP12.4□□□□□ -0.42
LIG3-204ENST00000585740 DHX15O43143 795 aaKnown RBP12.4□□□□□ -0.42
LIG3-204ENST00000585740 URI1O94763 535 aaPredicted RBP12.4□□□□□ -0.42
LIG3-204ENST00000585740 MYBP10242 640 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 EIF2AK2P19525 551 aaKnown RBP12.4□□□□□ -0.42
LIG3-204ENST00000585740 QARSP47897 775 aaKnown RBP12.4□□□□□ -0.42
LIG3-204ENST00000585740 MAP3K9P80192 1104 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 MRPS9P82933 396 aaKnown RBP12.4□□□□□ -0.42
LIG3-204ENST00000585740 MYBPC2Q14324 1141 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 MAP1SQ66K74 1059 aaPredicted RBP12.4□□□□□ -0.42
LIG3-204ENST00000585740 SNRNP48Q6IEG0 339 aaKnown RBP12.4□□□□□ -0.42
LIG3-204ENST00000585740 NSMFQ6X4W1 530 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 SLC30A10Q6XR72 485 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 FAM178BQ8IXR5 827 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 EHBP1Q8NDI1 1231 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 SLC17A8Q8NDX2 589 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 ACRBPQ8NEB7 543 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 IL31RAQ8NI17 732 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 PIGOQ8TEQ8 1089 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 ANKRD7Q92527 254 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 SYN2Q92777 582 aaPredicted RBP12.4□□□□□ -0.42
LIG3-204ENST00000585740 EEF2KMTQ96G04 330 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 CDHR1Q96JP9 859 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 EIF3CQ99613 913 aaKnown RBP12.4□□□□□ -0.42
LIG3-204ENST00000585740 MKNK1Q9BUB5 465 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 TEX13BQ9BXU2 312 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 FGFBP2Q9BYJ0 223 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 ACAD9Q9H845 621 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 CEP72Q9P209 647 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms