RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 MTMR1Q13613 665 aa25■■□□□ 1.59
SHMT1-210ENST00000583780 TTC22Q5TAA0 569 aa25■■□□□ 1.59
SHMT1-210ENST00000583780 RBM23Q86U06 439 aaKnown RBP25■■□□□ 1.59
SHMT1-210ENST00000583780 PBXIP1Q96AQ6 731 aa25■■□□□ 1.59
SHMT1-210ENST00000583780 CELF4Q9BZC1 486 aaKnown RBP25■■□□□ 1.59
SHMT1-210ENST00000583780 TRPV2Q9Y5S1 764 aa25■■□□□ 1.59
SHMT1-210ENST00000583780 IGSF9BQ9UPX0 1349 aa25■■□□□ 1.59
SHMT1-210ENST00000583780 EVPLQ92817 2033 aa25■■□□□ 1.59
SHMT1-210ENST00000583780 DDAH1O94760 285 aa24.99■■□□□ 1.59
SHMT1-210ENST00000583780 RPLP2P05387 115 aaKnown RBP24.99■■□□□ 1.59
SHMT1-210ENST00000583780 STAG3L1P0CL83 205 aa24.99■■□□□ 1.59
SHMT1-210ENST00000583780 UBE2SQ16763 222 aa24.99■■□□□ 1.59
SHMT1-210ENST00000583780 CTCFLQ8NI51 663 aaPredicted RBP24.99■■□□□ 1.59
SHMT1-210ENST00000583780 TRAPPC12Q8WVT3 735 aa24.99■■□□□ 1.59
SHMT1-210ENST00000583780 PPP2R3CQ969Q6 453 aa24.99■■□□□ 1.59
SHMT1-210ENST00000583780 LZTS2Q9BRK4 669 aa24.99■■□□□ 1.59
SHMT1-210ENST00000583780 BARX2Q9UMQ3 279 aaPredicted RBP24.99■■□□□ 1.59
SHMT1-210ENST00000583780 SCG2P13521 617 aa24.98■■□□□ 1.59
SHMT1-210ENST00000583780 KIF5BP33176 963 aa24.98■■□□□ 1.59
SHMT1-210ENST00000583780 COL9A3Q14050 684 aaPredicted RBP24.98■■□□□ 1.59
SHMT1-210ENST00000583780 PLCB4Q15147 1175 aa24.98■■□□□ 1.59
SHMT1-210ENST00000583780 MAP4K1Q92918 833 aa24.98■■□□□ 1.59
SHMT1-210ENST00000583780 SEC63Q9UGP8 760 aaKnown RBP24.98■■□□□ 1.59
SHMT1-210ENST00000583780 PCDHA6Q9UN73 950 aa24.98■■□□□ 1.59
SHMT1-210ENST00000583780 USP15Q9Y4E8 981 aaPredicted RBP24.98■■□□□ 1.59
SHMT1-210ENST00000583780 PCDHA8Q9Y5H6 950 aa24.98■■□□□ 1.59
SHMT1-210ENST00000583780 USP34Q70CQ2 3546 aa24.98■■□□□ 1.59
SHMT1-210ENST00000583780 KDM3AQ9Y4C1 1321 aa24.97■■□□□ 1.59
SHMT1-210ENST00000583780 PPFIA3O75145 1194 aa24.97■■□□□ 1.59
SHMT1-210ENST00000583780 RBM10P98175 930 aaKnown RBP24.97■■□□□ 1.59
SHMT1-210ENST00000583780 TCF15Q12870 199 aa24.97■■□□□ 1.59
SHMT1-210ENST00000583780 CYP2W1Q8TAV3 490 aa24.97■■□□□ 1.59
SHMT1-210ENST00000583780 ATP8B4Q8TF62 1192 aa24.97■■□□□ 1.59
SHMT1-210ENST00000583780 RUFY2Q8WXA3 655 aa24.97■■□□□ 1.59
SHMT1-210ENST00000583780 SLC9A2Q9UBY0 812 aa24.97■■□□□ 1.59
SHMT1-210ENST00000583780 KMT2EQ8IZD2 1858 aa24.97■■□□□ 1.59
SHMT1-210ENST00000583780 hCG_1642624A0A1W2PR95 340 aa24.96■■□□□ 1.59
SHMT1-210ENST00000583780 PER2O15055 1255 aa24.96■■□□□ 1.59
SHMT1-210ENST00000583780 PLPPR4Q7Z2D5 763 aa24.96■■□□□ 1.59
SHMT1-210ENST00000583780 NME8Q8N427 588 aa24.96■■□□□ 1.59
SHMT1-210ENST00000583780 VN1R2Q8NFZ6 395 aa24.96■■□□□ 1.59
SHMT1-210ENST00000583780 TLE6Q9H808 572 aa24.96■■□□□ 1.59
SHMT1-210ENST00000583780 JPH1Q9HDC5 661 aaPredicted RBP24.96■■□□□ 1.59
SHMT1-210ENST00000583780 KCNH7Q9NS40 1196 aa24.96■■□□□ 1.59
SHMT1-210ENST00000583780 MYO10Q9HD67 2058 aa24.96■■□□□ 1.59
SHMT1-210ENST00000583780 SMIM35A0A1B0GVV1 85 aa24.95■■□□□ 1.58
SHMT1-210ENST00000583780 SGSM2O43147 1006 aa24.95■■□□□ 1.58
SHMT1-210ENST00000583780 MGEA5O60502 916 aa24.95■■□□□ 1.58
SHMT1-210ENST00000583780 GNAQP50148 359 aa24.95■■□□□ 1.58
SHMT1-210ENST00000583780 PAK2Q13177 524 aa24.95■■□□□ 1.58
SHMT1-210ENST00000583780 TMEM266Q2M3C6 531 aa24.95■■□□□ 1.58
SHMT1-210ENST00000583780 MTHFD1LQ6UB35 978 aa24.95■■□□□ 1.58
SHMT1-210ENST00000583780 SUSD6Q92537 303 aa24.95■■□□□ 1.58
SHMT1-210ENST00000583780 MXRA8Q9BRK3 442 aa24.95■■□□□ 1.58
SHMT1-210ENST00000583780 PHF7Q9BWX1 381 aaPredicted RBP24.95■■□□□ 1.58
SHMT1-210ENST00000583780 CDHR5Q9HBB8 845 aa24.95■■□□□ 1.58
SHMT1-210ENST00000583780 ATG7O95352 703 aa24.94■■□□□ 1.58
SHMT1-210ENST00000583780 RXRAP19793 462 aa24.94■■□□□ 1.58
SHMT1-210ENST00000583780 SARSP49591 514 aaKnown RBP24.94■■□□□ 1.58
SHMT1-210ENST00000583780 STAT5BP51692 787 aa24.94■■□□□ 1.58
SHMT1-210ENST00000583780 PTPN5P54829 565 aa24.94■■□□□ 1.58
SHMT1-210ENST00000583780 ERVFC1P60507 584 aa24.94■■□□□ 1.58
SHMT1-210ENST00000583780 ACTR2P61160 394 aa24.94■■□□□ 1.58
SHMT1-210ENST00000583780 KRT76Q01546 638 aa24.94■■□□□ 1.58
SHMT1-210ENST00000583780 PKN1Q16512 942 aa24.94■■□□□ 1.58
SHMT1-210ENST00000583780 FBXL6Q8N531 539 aa24.94■■□□□ 1.58
SHMT1-210ENST00000583780 MTA3Q9BTC8 594 aa24.94■■□□□ 1.58
SHMT1-210ENST00000583780 AZI2Q9H6S1 392 aa24.94■■□□□ 1.58
SHMT1-210ENST00000583780 TRPC6Q9Y210 931 aa24.94■■□□□ 1.58
SHMT1-210ENST00000583780 CACNA1HO95180 2353 aa24.94■■□□□ 1.58
SHMT1-210ENST00000583780 SPDYE3A6NKU9 549 aa24.93■■□□□ 1.58
SHMT1-210ENST00000583780 M0QZ92 97 aa24.93■■□□□ 1.58
SHMT1-210ENST00000583780 ARP10275 920 aa24.93■■□□□ 1.58
SHMT1-210ENST00000583780 KCNC3Q14003 757 aa24.93■■□□□ 1.58
SHMT1-210ENST00000583780 FAM102BQ5T8I3 360 aa24.93■■□□□ 1.58
SHMT1-210ENST00000583780 MICAL1Q8TDZ2 1067 aa24.93■■□□□ 1.58
SHMT1-210ENST00000583780 TNPO1Q92973 898 aaKnown RBP24.93■■□□□ 1.58
SHMT1-210ENST00000583780 RPGRIP1Q96KN7 1286 aa24.93■■□□□ 1.58
SHMT1-210ENST00000583780 ERVK-5Q9HDB9 667 aa24.93■■□□□ 1.58
SHMT1-210ENST00000583780 LRFN2Q9ULH4 789 aa24.93■■□□□ 1.58
SHMT1-210ENST00000583780 PCDHB7Q9Y5E2 793 aa24.93■■□□□ 1.58
SHMT1-210ENST00000583780 NFASCO94856 1347 aa24.92■■□□□ 1.58
SHMT1-210ENST00000583780 SH2B2O14492 632 aaPredicted RBP24.92■■□□□ 1.58
SHMT1-210ENST00000583780 PRC1O43663 620 aa24.92■■□□□ 1.58
SHMT1-210ENST00000583780 ATF7P17544 494 aaPredicted RBP24.92■■□□□ 1.58
SHMT1-210ENST00000583780 UBE3AQ05086 875 aa24.92■■□□□ 1.58
SHMT1-210ENST00000583780 NFX1Q12986 1120 aaKnown RBP24.92■■□□□ 1.58
SHMT1-210ENST00000583780 TMTC2Q8N394 836 aa24.92■■□□□ 1.58
SHMT1-210ENST00000583780 TMEM40Q8WWA1 233 aa24.92■■□□□ 1.58
SHMT1-210ENST00000583780 ASIC4Q96FT7 647 aa24.92■■□□□ 1.58
SHMT1-210ENST00000583780 HCSTQ9UBK5 93 aa24.92■■□□□ 1.58
SHMT1-210ENST00000583780 NOC2LQ9Y3T9 749 aaKnown RBP24.92■■□□□ 1.58
SHMT1-210ENST00000583780 RBM8AQ9Y5S9 174 aaKnown RBP24.92■■□□□ 1.58
SHMT1-210ENST00000583780 IGKV6D-21A0A0A0MT36 114 aa24.91■■□□□ 1.58
SHMT1-210ENST00000583780 KLRC1P26715 233 aa24.91■■□□□ 1.58
SHMT1-210ENST00000583780 SIGLEC14Q08ET2 396 aa24.91■■□□□ 1.58
SHMT1-210ENST00000583780 ITGB3BPQ13352 177 aaPredicted RBP24.91■■□□□ 1.58
SHMT1-210ENST00000583780 DUSP6Q16828 381 aa24.91■■□□□ 1.58
SHMT1-210ENST00000583780 KIAA0319LQ8IZA0 1049 aa24.91■■□□□ 1.58
SHMT1-210ENST00000583780 CCDC82Q8N4S0 544 aa24.91■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms