RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 TMEM62Q0P6H9 643 aa14.66□□□□□ -0.06
SS18-219ENST00000581570 PAK2Q13177 524 aa14.66□□□□□ -0.06
SS18-219ENST00000581570 USP17L6PQ6QN14 398 aa14.66□□□□□ -0.06
SS18-219ENST00000581570 CDHR1Q96JP9 859 aa14.66□□□□□ -0.06
SS18-219ENST00000581570 LNPKQ9C0E8 428 aa14.66□□□□□ -0.06
SS18-219ENST00000581570 S1PR5Q9H228 398 aa14.66□□□□□ -0.06
SS18-219ENST00000581570 PCDHB7Q9Y5E2 793 aa14.66□□□□□ -0.06
SS18-219ENST00000581570 FGF18O76093 207 aa14.65□□□□□ -0.06
SS18-219ENST00000581570 SRGAP2BP0DMP2 458 aa14.65□□□□□ -0.06
SS18-219ENST00000581570 TECP42680 631 aa14.65□□□□□ -0.06
SS18-219ENST00000581570 SARSP49591 514 aaKnown RBP14.65□□□□□ -0.06
SS18-219ENST00000581570 ERVFC1P60507 584 aa14.65□□□□□ -0.06
SS18-219ENST00000581570 PDE12Q6L8Q7 609 aaKnown RBP14.65□□□□□ -0.06
SS18-219ENST00000581570 TMEM184AQ6ZMB5 413 aa14.65□□□□□ -0.06
SS18-219ENST00000581570 GPRASP2Q96D09 838 aa14.65□□□□□ -0.06
SS18-219ENST00000581570 APOL5Q9BWW9 433 aa14.65□□□□□ -0.06
SS18-219ENST00000581570 CELF4Q9BZC1 486 aaKnown RBP14.65□□□□□ -0.06
SS18-219ENST00000581570 KMT2EQ8IZD2 1858 aa14.65□□□□□ -0.06
SS18-219ENST00000581570 IGSF9BQ9UPX0 1349 aa14.65□□□□□ -0.06
SS18-219ENST00000581570 CFAP54Q96N23 3096 aa14.64□□□□□ -0.07
SS18-219ENST00000581570 TBKBP1A7MCY6 615 aa14.64□□□□□ -0.07
SS18-219ENST00000581570 HIP1O00291 1037 aa14.64□□□□□ -0.07
SS18-219ENST00000581570 IFIT3O14879 490 aaKnown RBP14.64□□□□□ -0.07
SS18-219ENST00000581570 SP100P23497 879 aaPredicted RBP14.64□□□□□ -0.07
SS18-219ENST00000581570 NFX1Q12986 1120 aaKnown RBP14.64□□□□□ -0.07
SS18-219ENST00000581570 TRDNQ13061 729 aa14.64□□□□□ -0.07
SS18-219ENST00000581570 ANKRD54Q6NXT1 300 aa14.64□□□□□ -0.07
SS18-219ENST00000581570 SYCE2Q6PIF2 218 aa14.64□□□□□ -0.07
SS18-219ENST00000581570 THNSL1Q8IYQ7 743 aa14.64□□□□□ -0.07
SS18-219ENST00000581570 KREMEN2Q8NCW0 462 aa14.64□□□□□ -0.07
SS18-219ENST00000581570 TNPO1Q92973 898 aaKnown RBP14.64□□□□□ -0.07
SS18-219ENST00000581570 TMX1Q9H3N1 280 aa14.64□□□□□ -0.07
SS18-219ENST00000581570 TMEM260Q9NX78 707 aa14.64□□□□□ -0.07
SS18-219ENST00000581570 PKD2L1Q9P0L9 805 aa14.64□□□□□ -0.07
SS18-219ENST00000581570 TRPC6Q9Y210 931 aa14.64□□□□□ -0.07
SS18-219ENST00000581570 PCDHA2Q9Y5H9 948 aa14.64□□□□□ -0.07
SS18-219ENST00000581570 ERICH2A1L162 156 aa14.63□□□□□ -0.07
SS18-219ENST00000581570 PRR23AA6NEV1 266 aa14.63□□□□□ -0.07
SS18-219ENST00000581570 PIK3CDO00329 1044 aa14.63□□□□□ -0.07
SS18-219ENST00000581570 MEIS2O14770 477 aa14.63□□□□□ -0.07
SS18-219ENST00000581570 FSCN2O14926 492 aa14.63□□□□□ -0.07
SS18-219ENST00000581570 ITGB5P18084 799 aa14.63□□□□□ -0.07
SS18-219ENST00000581570 NBL1P41271 181 aa14.63□□□□□ -0.07
SS18-219ENST00000581570 TROAPQ12815 778 aa14.63□□□□□ -0.07
SS18-219ENST00000581570 HDAC1Q13547 482 aaPredicted RBP14.63□□□□□ -0.07
SS18-219ENST00000581570 KCNC3Q14003 757 aa14.63□□□□□ -0.07
SS18-219ENST00000581570 TMEM266Q2M3C6 531 aa14.63□□□□□ -0.07
SS18-219ENST00000581570 DIEXFQ68CQ4 756 aaKnown RBP14.63□□□□□ -0.07
SS18-219ENST00000581570 UBALD2Q8IYN6 164 aa14.63□□□□□ -0.07
SS18-219ENST00000581570 NME8Q8N427 588 aa14.63□□□□□ -0.07
SS18-219ENST00000581570 SENP2Q9HC62 589 aa14.63□□□□□ -0.07
SS18-219ENST00000581570 TYW1Q9NV66 732 aaKnown RBP14.63□□□□□ -0.07
SS18-219ENST00000581570 NR2E1Q9Y466 385 aa14.63□□□□□ -0.07
SS18-219ENST00000581570 ZDBF2Q9HCK1 2354 aa14.62□□□□□ -0.07
SS18-219ENST00000581570 HOXB8P17481 243 aaPredicted RBP14.62□□□□□ -0.07
SS18-219ENST00000581570 KRT76Q01546 638 aa14.62□□□□□ -0.07
SS18-219ENST00000581570 APOBRQ0VD83 1088 aa14.62□□□□□ -0.07
SS18-219ENST00000581570 WTAPQ15007 396 aa14.62□□□□□ -0.07
SS18-219ENST00000581570 FAM102BQ5T8I3 360 aa14.62□□□□□ -0.07
SS18-219ENST00000581570 PLPP4Q5VZY2 271 aa14.62□□□□□ -0.07
SS18-219ENST00000581570 LLGL2Q6P1M3 1020 aa14.62□□□□□ -0.07
SS18-219ENST00000581570 TMEM105Q8N8V8 129 aa14.62□□□□□ -0.07
SS18-219ENST00000581570 COLGALT1Q8NBJ5 622 aa14.62□□□□□ -0.07
SS18-219ENST00000581570 RASGRP4Q8TDF6 673 aa14.62□□□□□ -0.07
SS18-219ENST00000581570 TRAPPC12Q8WVT3 735 aa14.62□□□□□ -0.07
SS18-219ENST00000581570 PCYT2Q99447 389 aa14.62□□□□□ -0.07
SS18-219ENST00000581570 AZI2Q9H6S1 392 aa14.62□□□□□ -0.07
SS18-219ENST00000581570 TSHZ2Q9NRE2 1034 aa14.62□□□□□ -0.07
SS18-219ENST00000581570 PUF60Q9UHX1 559 aaKnown RBP14.62□□□□□ -0.07
SS18-219ENST00000581570 KDM3AQ9Y4C1 1321 aa14.62□□□□□ -0.07
SS18-219ENST00000581570 SMIM35A0A1B0GVV1 85 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 DENND3A2RUS2 1198 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 MGEA5O60502 916 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 MTMR1Q13613 665 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 MTMR3Q13615 1198 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 PLCB4Q15147 1175 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 FAM43BQ6ZT52 329 aaPredicted RBP14.61□□□□□ -0.07
SS18-219ENST00000581570 ERMP1Q7Z2K6 904 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 CATIPQ7Z7H3 387 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 PLEKHM2Q8IWE5 1019 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 MRPS27Q92552 414 aaKnown RBP14.61□□□□□ -0.07
SS18-219ENST00000581570 RRP36Q96EU6 259 aaKnown RBP14.61□□□□□ -0.07
SS18-219ENST00000581570 ADAM2Q99965 735 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 ERVK-5Q9HDB9 667 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 RGS18Q9NS28 235 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 C1orf112Q9NSG2 853 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 HCSTQ9UBK5 93 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 SORCS3Q9UPU3 1222 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 LZTS1Q9Y250 596 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 UBIAD1Q9Y5Z9 338 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 LAMA4Q16363 1823 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 KAT6AQ92794 2004 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 ZFHX2Q9C0A1 2572 aaPredicted RBP14.61□□□□□ -0.07
SS18-219ENST00000581570 DOCK5Q9H7D0 1870 aa14.61□□□□□ -0.07
SS18-219ENST00000581570 MAFGO15525 162 aa14.6□□□□□ -0.07
SS18-219ENST00000581570 RPS6KA5O75582 802 aa14.6□□□□□ -0.07
SS18-219ENST00000581570 BRD1O95696 1058 aa14.6□□□□□ -0.07
SS18-219ENST00000581570 LAG3P18627 525 aa14.6□□□□□ -0.07
SS18-219ENST00000581570 PLCB3Q01970 1234 aa14.6□□□□□ -0.07
SS18-219ENST00000581570 B4GALNT3Q6L9W6 998 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms