RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 SNAP25P60880 206 aa6.9□□□□□ -1.3
VPS53-208ENST00000570650 SMAD4Q13485 552 aaKnown RBP6.9□□□□□ -1.3
VPS53-208ENST00000570650 RNFT1Q5M7Z0 435 aa6.9□□□□□ -1.3
VPS53-208ENST00000570650 ZKSCAN2Q63HK3 967 aa6.9□□□□□ -1.3
VPS53-208ENST00000570650 ZSCAN25Q6NSZ9 544 aa6.9□□□□□ -1.3
VPS53-208ENST00000570650 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.9□□□□□ -1.3
VPS53-208ENST00000570650 SV2AQ7L0J3 742 aa6.9□□□□□ -1.3
VPS53-208ENST00000570650 TRIM22Q8IYM9 498 aa6.9□□□□□ -1.3
VPS53-208ENST00000570650 MYOCDQ8IZQ8 938 aa6.9□□□□□ -1.3
VPS53-208ENST00000570650 FBXL6Q8N531 539 aa6.9□□□□□ -1.3
VPS53-208ENST00000570650 COPS5Q92905 334 aa6.9□□□□□ -1.3
VPS53-208ENST00000570650 KIF1BPQ96EK5 621 aa6.9□□□□□ -1.3
VPS53-208ENST00000570650 MPHOSPH6Q99547 160 aaKnown RBP6.9□□□□□ -1.3
VPS53-208ENST00000570650 PUS7LQ9H0K6 701 aaKnown RBP6.9□□□□□ -1.3
VPS53-208ENST00000570650 GTF2IRD1Q9UHL9 959 aa6.9□□□□□ -1.3
VPS53-208ENST00000570650 PRR12Q9ULL5 1215 aa6.9□□□□□ -1.3
VPS53-208ENST00000570650 PLIN4Q96Q06 1357 aa6.9□□□□□ -1.31
VPS53-208ENST00000570650 PTPRZ1P23471 2315 aaPredicted RBP6.9□□□□□ -1.31
VPS53-208ENST00000570650 A0A1B0GTH6 734 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 PTPDC1A2A3K4 754 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 GSG1L2A8MUP6 293 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 STXBP3O00186 592 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 NFIBO00712 420 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 CDK2AP1O14519 115 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 BACH1O14867 736 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 PRDM1O75626 825 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 F11P03951 625 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 ICAM1P05362 532 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 MMP3P08254 477 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 TSPY3P0CV98 308 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 TSPY8P0CW00 308 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 TXNP10599 105 aaKnown RBP6.89□□□□□ -1.31
VPS53-208ENST00000570650 ATP5JP18859 108 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 MCCP23508 829 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 EDNRBP24530 442 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 CALML3P27482 149 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 PDE4BQ07343 736 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 PTK7Q13308 1070 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 CLUL1Q15846 466 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 CRTC2Q53ET0 693 aaPredicted RBP6.89□□□□□ -1.31
VPS53-208ENST00000570650 RCSD1Q6JBY9 416 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 KCTD1Q719H9 257 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 ERMP1Q7Z2K6 904 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 FBXO11Q86XK2 927 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 ITPRIPQ8IWB1 547 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 FTSJ3Q8IY81 847 aaKnown RBP6.89□□□□□ -1.31
VPS53-208ENST00000570650 TMEM192Q8IY95 271 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 SIX5Q8N196 739 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 NEDD1Q8NHV4 660 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 ATOH1Q92858 354 aaPredicted RBP6.89□□□□□ -1.31
VPS53-208ENST00000570650 STRBPQ96SI9 672 aaKnown RBP6.89□□□□□ -1.31
VPS53-208ENST00000570650 YME1L1Q96TA2 773 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 HAUS7Q99871 368 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 SCHIP1Q9P0W5 487 aaPredicted RBP6.89□□□□□ -1.31
VPS53-208ENST00000570650 EMSYQ7Z589 1322 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 MICAL3Q7RTP6 2002 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 MYO7AQ13402 2215 aa6.89□□□□□ -1.31
VPS53-208ENST00000570650 MYH7P12883 1935 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 SFI1A8K8P3 1242 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 B4DLN1 442 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 TBX10O75333 385 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 ARIH2O95376 493 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 GH1P01241 217 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 CASTP20810 708 aaKnown RBP6.88□□□□□ -1.31
VPS53-208ENST00000570650 MSX1P28360 303 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 TDO2P48775 406 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 MRPL12P52815 198 aaKnown RBP6.88□□□□□ -1.31
VPS53-208ENST00000570650 ZXDAP98168 799 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 DLX2Q07687 328 aaPredicted RBP6.88□□□□□ -1.31
VPS53-208ENST00000570650 HYAL1Q12794 435 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 MBTPS1Q14703 1052 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 TRIM71Q2Q1W2 868 aaKnown RBP6.88□□□□□ -1.31
VPS53-208ENST00000570650 TBCELQ5QJ74 424 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 ZNF618Q5T7W0 954 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 SLC30A10Q6XR72 485 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 RNF207Q6ZRF8 634 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 C7orf31Q8N865 590 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 DBF4BQ8NFT6 615 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 DNERQ8NFT8 737 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 AFG1LQ8WV93 481 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 KAT2BQ92831 832 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 CHMP4CQ96CF2 233 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 CNTNAP3BQ96NU0 1288 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 KATNAL1Q9BW62 490 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 NIFKQ9BYG3 293 aaKnown RBP6.88□□□□□ -1.31
VPS53-208ENST00000570650 CNTNAP3Q9BZ76 1288 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 LMAN2LQ9H0V9 348 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 BCL11AQ9H165 835 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 RANBP17Q9H2T7 1088 aaKnown RBP6.88□□□□□ -1.31
VPS53-208ENST00000570650 ALG13Q9NP73 1137 aaKnown RBP6.88□□□□□ -1.31
VPS53-208ENST00000570650 HDAC6Q9UBN7 1215 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 CD207Q9UJ71 328 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 CACNA1HO95180 2353 aa6.88□□□□□ -1.31
VPS53-208ENST00000570650 KMT2EQ8IZD2 1858 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 COL4A6Q14031 1691 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 PROB1E7EW31 1015 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 RB1P06400 928 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 ATP4AP20648 1035 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 AVPR2P30518 371 aa6.87□□□□□ -1.31
VPS53-208ENST00000570650 CTNNB1P35222 781 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms