RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 KIF5AQ12840 1032 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 EHBP1Q8NDI1 1231 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 NACC1Q96RE7 527 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 FIZ1Q96SL8 496 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 RIT2Q99578 217 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 LXNQ9BS40 222 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 IFIH1Q9BYX4 1025 aaKnown RBP22.32■■□□□ 1.16
CLN3-230ENST00000568076 DEF6Q9H4E7 631 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 KCNH7Q9NS40 1196 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 FHOD1Q9Y613 1164 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 ZMYM2Q9UBW7 1377 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 MACROD2A1Z1Q3 448 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 NR3C1P04150 777 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 BCRP11274 1271 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 VCAM1P19320 739 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 RASSF7Q02833 373 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 MAPK8IP2Q13387 824 aaPredicted RBP22.32■■□□□ 1.16
CLN3-230ENST00000568076 MTMR2Q13614 643 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 NBPF12Q5TAG4 269 aaPredicted RBP22.32■■□□□ 1.16
CLN3-230ENST00000568076 PAPD7Q5XG87 772 aaKnown RBP22.32■■□□□ 1.16
CLN3-230ENST00000568076 DPY19L2P1Q6NXN4 242 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 MYCT1Q8N699 235 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 BANK1Q8NDB2 785 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 GANQ9H2C0 597 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 ANKZF1Q9H8Y5 726 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 HOMER2Q9NSB8 354 aa22.32■■□□□ 1.16
CLN3-230ENST00000568076 ARMCX3Q9UH62 379 aaPredicted RBP22.32■■□□□ 1.16
CLN3-230ENST00000568076 DDX39AO00148 427 aaKnown RBP22.31■■□□□ 1.16
CLN3-230ENST00000568076 AKR1B10O60218 316 aa22.31■■□□□ 1.16
CLN3-230ENST00000568076 SEC31AO94979 1220 aaKnown RBP22.31■■□□□ 1.16
CLN3-230ENST00000568076 CASP4P49662 377 aa22.31■■□□□ 1.16
CLN3-230ENST00000568076 SYN2Q92777 582 aaPredicted RBP22.31■■□□□ 1.16
CLN3-230ENST00000568076 TSGA10Q9BZW7 698 aa22.31■■□□□ 1.16
CLN3-230ENST00000568076 MTFR1LQ9H019 292 aa22.31■■□□□ 1.16
CLN3-230ENST00000568076 GINM1Q9NU53 330 aa22.31■■□□□ 1.16
CLN3-230ENST00000568076 PKD2L1Q9P0L9 805 aa22.31■■□□□ 1.16
CLN3-230ENST00000568076 CNOT7Q9UIV1 285 aaKnown RBP22.31■■□□□ 1.16
CLN3-230ENST00000568076 BCS1LQ9Y276 419 aa22.31■■□□□ 1.16
CLN3-230ENST00000568076 SSU72P8A0A1W2PR75 194 aa22.3■■□□□ 1.16
CLN3-230ENST00000568076 CLIC2O15247 247 aa22.3■■□□□ 1.16
CLN3-230ENST00000568076 EIF3DO15371 548 aaKnown RBP eCLIP22.3■■□□□ 1.16
CLN3-230ENST00000568076 DHX15O43143 795 aaKnown RBP22.3■■□□□ 1.16
CLN3-230ENST00000568076 FLOT1O75955 427 aa22.3■■□□□ 1.16
CLN3-230ENST00000568076 ZNF131P52739 623 aa22.3■■□□□ 1.16
CLN3-230ENST00000568076 MRPS9P82933 396 aaKnown RBP22.3■■□□□ 1.16
CLN3-230ENST00000568076 ZC2HC1CQ53FD0 456 aaPredicted RBP22.3■■□□□ 1.16
CLN3-230ENST00000568076 TMCO3Q6UWJ1 677 aa22.3■■□□□ 1.16
CLN3-230ENST00000568076 MCF2L2Q86YR7 1114 aa22.3■■□□□ 1.16
CLN3-230ENST00000568076 SYTL5Q8TDW5 730 aaPredicted RBP22.3■■□□□ 1.16
CLN3-230ENST00000568076 PARVGQ9HBI0 331 aa22.3■■□□□ 1.16
CLN3-230ENST00000568076 PPP1R9AQ9ULJ8 1098 aa22.3■■□□□ 1.16
CLN3-230ENST00000568076 GJA3Q9Y6H8 435 aa22.3■■□□□ 1.16
CLN3-230ENST00000568076 GFPT1Q06210 699 aaPredicted RBP22.3■■□□□ 1.16
CLN3-230ENST00000568076 ITGB3BPQ13352 177 aaPredicted RBP22.3■■□□□ 1.16
CLN3-230ENST00000568076 SFMBT2Q5VUG0 894 aa22.3■■□□□ 1.16
CLN3-230ENST00000568076 SECISBP2LQ93073 1101 aaKnown RBP22.3■■□□□ 1.16
CLN3-230ENST00000568076 UBIAD1Q9Y5Z9 338 aa22.3■■□□□ 1.16
CLN3-230ENST00000568076 FZD9O00144 591 aa22.29■■□□□ 1.16
CLN3-230ENST00000568076 SLC16A3O15427 465 aaKnown RBP22.29■■□□□ 1.16
CLN3-230ENST00000568076 SRGAP2O75044 1071 aa22.29■■□□□ 1.16
CLN3-230ENST00000568076 EPS15P42566 896 aa22.29■■□□□ 1.16
CLN3-230ENST00000568076 TKFCQ3LXA3 575 aa22.29■■□□□ 1.16
CLN3-230ENST00000568076 GLIPR1L2Q4G1C9 344 aa22.29■■□□□ 1.16
CLN3-230ENST00000568076 CC2D1AQ6P1N0 951 aaPredicted RBP22.29■■□□□ 1.16
CLN3-230ENST00000568076 NIPA1Q7RTP0 329 aa22.29■■□□□ 1.16
CLN3-230ENST00000568076 KSR1Q8IVT5 923 aa22.29■■□□□ 1.16
CLN3-230ENST00000568076 NUCKS1Q9H1E3 243 aaKnown RBP22.29■■□□□ 1.16
CLN3-230ENST00000568076 MLXIPQ9HAP2 919 aa22.29■■□□□ 1.16
CLN3-230ENST00000568076 CTAGE15A4D2H0 777 aa22.29■■□□□ 1.16
CLN3-230ENST00000568076 AFPP02771 609 aaKnown RBP22.29■■□□□ 1.16
CLN3-230ENST00000568076 CTAGE8P0CG41 777 aa22.29■■□□□ 1.16
CLN3-230ENST00000568076 PNMA6AP0CW24 399 aaPredicted RBP22.29■■□□□ 1.16
CLN3-230ENST00000568076 ACTN1P12814 892 aa22.29■■□□□ 1.16
CLN3-230ENST00000568076 BMS1Q14692 1282 aaKnown RBP22.29■■□□□ 1.16
CLN3-230ENST00000568076 PCNX4Q63HM2 1172 aa22.29■■□□□ 1.16
CLN3-230ENST00000568076 CTAGE6Q86UF2 777 aa22.29■■□□□ 1.16
CLN3-230ENST00000568076 CTAGE4Q8IX94 777 aa22.29■■□□□ 1.16
CLN3-230ENST00000568076 TAAR1Q96RJ0 339 aa22.29■■□□□ 1.16
CLN3-230ENST00000568076 RPAP3Q9H6T3 665 aaPredicted RBP22.29■■□□□ 1.16
CLN3-230ENST00000568076 AGO4Q9HCK5 861 aaKnown RBP22.29■■□□□ 1.16
CLN3-230ENST00000568076 SAR1BQ9Y6B6 198 aa22.29■■□□□ 1.16
CLN3-230ENST00000568076 CAPN6Q9Y6Q1 641 aa22.29■■□□□ 1.16
CLN3-230ENST00000568076 USO1O60763 962 aaKnown RBP22.28■■□□□ 1.16
CLN3-230ENST00000568076 SERPING1P05155 500 aa22.28■■□□□ 1.16
CLN3-230ENST00000568076 SLC9A1P19634 815 aa22.28■■□□□ 1.16
CLN3-230ENST00000568076 RPL13P26373 211 aaKnown RBP22.28■■□□□ 1.16
CLN3-230ENST00000568076 TDRD12Q587J7 1177 aaKnown RBP22.28■■□□□ 1.16
CLN3-230ENST00000568076 ZNF720Q7Z2F6 126 aa22.28■■□□□ 1.16
CLN3-230ENST00000568076 MSANTD4Q8NCY6 345 aa22.28■■□□□ 1.16
CLN3-230ENST00000568076 KCND2Q9NZV8 630 aa22.28■■□□□ 1.16
CLN3-230ENST00000568076 ODF2LQ9ULJ1 636 aa22.28■■□□□ 1.16
CLN3-230ENST00000568076 RBAK-RBAKDNI3L0D1 243 aa22.27■■□□□ 1.16
CLN3-230ENST00000568076 XRCC5P13010 732 aaKnown RBP22.27■■□□□ 1.16
CLN3-230ENST00000568076 MAGEA1P43355 309 aa22.27■■□□□ 1.16
CLN3-230ENST00000568076 RPS6P62753 249 aaKnown RBP22.27■■□□□ 1.16
CLN3-230ENST00000568076 SPP2Q13103 211 aa22.27■■□□□ 1.16
CLN3-230ENST00000568076 MAPK7Q13164 816 aa22.27■■□□□ 1.16
CLN3-230ENST00000568076 SLC9C1Q4G0N8 1177 aa22.27■■□□□ 1.16
CLN3-230ENST00000568076 MIER3Q7Z3K6 550 aa22.27■■□□□ 1.16
CLN3-230ENST00000568076 KRT222Q8N1A0 295 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms