RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 AGO3Q9H9G7 860 aaKnown RBP16.89■□□□□ 0.29
CLN3-213ENST00000565047 PCDHA4Q9UN74 947 aa16.89■□□□□ 0.29
CLN3-213ENST00000565047 INSL6Q9Y581 213 aa16.89■□□□□ 0.29
CLN3-213ENST00000565047 CDY2AQ9Y6F7 541 aa16.89■□□□□ 0.29
CLN3-213ENST00000565047 KAT6AQ92794 2004 aa16.89■□□□□ 0.29
CLN3-213ENST00000565047 COL4A6Q14031 1691 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 CYP3A7-CYP3A51PA0A087WV96 503 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 SMIM35A0A1B0GVV1 85 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 MSH4O15457 936 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 SEC24BO95487 1268 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 GHRP10912 638 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 CYP3A7P24462 503 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 NLRP5P59047 1200 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 GRB10Q13322 594 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 SWSAP1Q6NVH7 229 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 FAM117BQ6P1L5 589 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 MTHFD1LQ6UB35 978 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 B3GNT9Q6UX72 402 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 TRIM22Q8IYM9 498 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 MYOCDQ8IZQ8 938 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 ZBED2Q9BTP6 218 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 SUGCTQ9HAC7 445 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 ZNF302Q9NR11 478 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 TRPC6Q9Y210 931 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 SQORQ9Y6N5 450 aa16.88■□□□□ 0.29
CLN3-213ENST00000565047 ENPP3O14638 875 aa16.87■□□□□ 0.29
CLN3-213ENST00000565047 HBP1O60381 514 aa16.87■□□□□ 0.29
CLN3-213ENST00000565047 MRPS6P82932 125 aaKnown RBP16.87■□□□□ 0.29
CLN3-213ENST00000565047 CCDC85BQ15834 202 aaPredicted RBP16.87■□□□□ 0.29
CLN3-213ENST00000565047 Q4G0T1 1027 aa16.87■□□□□ 0.29
CLN3-213ENST00000565047 MIS18BP1Q6P0N0 1132 aa16.87■□□□□ 0.29
CLN3-213ENST00000565047 RSPH3Q86UC2 560 aa16.87■□□□□ 0.29
CLN3-213ENST00000565047 RTN4RL1Q86UN2 441 aaPredicted RBP16.87■□□□□ 0.29
CLN3-213ENST00000565047 SMAP1Q8IYB5 467 aaPredicted RBP16.87■□□□□ 0.29
CLN3-213ENST00000565047 BLIDQ8IZY5 108 aa16.87■□□□□ 0.29
CLN3-213ENST00000565047 TBCKQ8TEA7 893 aa16.87■□□□□ 0.29
CLN3-213ENST00000565047 LINC01599Q8WXQ3 324 aa16.87■□□□□ 0.29
CLN3-213ENST00000565047 PPM1EQ8WY54 764 aa16.87■□□□□ 0.29
CLN3-213ENST00000565047 SLC5A5Q92911 643 aa16.87■□□□□ 0.29
CLN3-213ENST00000565047 TNPO1Q92973 898 aaKnown RBP16.87■□□□□ 0.29
CLN3-213ENST00000565047 PHF20Q9BVI0 1012 aa16.87■□□□□ 0.29
CLN3-213ENST00000565047 RC3H2Q9HBD1 1191 aaKnown RBP16.87■□□□□ 0.29
CLN3-213ENST00000565047 KDM3AQ9Y4C1 1321 aa16.87■□□□□ 0.29
CLN3-213ENST00000565047 CUL9Q8IWT3 2517 aa16.86■□□□□ 0.29
CLN3-213ENST00000565047 CPLX1O14810 134 aa16.86■□□□□ 0.29
CLN3-213ENST00000565047 DTNBO60941 627 aa16.86■□□□□ 0.29
CLN3-213ENST00000565047 RPLP2P05387 115 aaKnown RBP16.86■□□□□ 0.29
CLN3-213ENST00000565047 LINC00271P0C7V0 271 aa16.86■□□□□ 0.29
CLN3-213ENST00000565047 KLRC1P26715 233 aa16.86■□□□□ 0.29
CLN3-213ENST00000565047 AK2P54819 239 aa16.86■□□□□ 0.29
CLN3-213ENST00000565047 KRT76Q01546 638 aa16.86■□□□□ 0.29
CLN3-213ENST00000565047 GALNT17Q6IS24 598 aa16.86■□□□□ 0.29
CLN3-213ENST00000565047 PDXDC2PQ6P474 469 aa16.86■□□□□ 0.29
CLN3-213ENST00000565047 TSHZ1Q6ZSZ6 1077 aa16.86■□□□□ 0.29
CLN3-213ENST00000565047 KIAA0319LQ8IZA0 1049 aa16.86■□□□□ 0.29
CLN3-213ENST00000565047 NME8Q8N427 588 aa16.86■□□□□ 0.29
CLN3-213ENST00000565047 TGS1Q96RS0 853 aaKnown RBP16.86■□□□□ 0.29
CLN3-213ENST00000565047 RIT2Q99578 217 aa16.86■□□□□ 0.29
CLN3-213ENST00000565047 FAM49AQ9H0Q0 323 aaPredicted RBP16.86■□□□□ 0.29
CLN3-213ENST00000565047 PCDHA10Q9Y5I2 948 aa16.86■□□□□ 0.29
CLN3-213ENST00000565047 STK36Q9NRP7 1315 aa16.86■□□□□ 0.29
CLN3-213ENST00000565047 IGSF9BQ9UPX0 1349 aa16.86■□□□□ 0.29
CLN3-213ENST00000565047 PRRC2BQ5JSZ5 2229 aaKnown RBP16.86■□□□□ 0.29
CLN3-213ENST00000565047 COL1A2P08123 1366 aa16.86■□□□□ 0.29
CLN3-213ENST00000565047 COL4A4P53420 1690 aaPredicted RBP16.85■□□□□ 0.29
CLN3-213ENST00000565047 BACH1O14867 736 aa16.85■□□□□ 0.29
CLN3-213ENST00000565047 ZNF862O60290 1169 aa16.85■□□□□ 0.29
CLN3-213ENST00000565047 PSMD10O75832 226 aa16.85■□□□□ 0.29
CLN3-213ENST00000565047 FDPSP14324 419 aaKnown RBP16.85■□□□□ 0.29
CLN3-213ENST00000565047 ZNF484Q5JVG2 852 aa16.85■□□□□ 0.29
CLN3-213ENST00000565047 IER5Q5VY09 327 aa16.85■□□□□ 0.29
CLN3-213ENST00000565047 FAM160B1Q5W0V3 765 aa16.85■□□□□ 0.29
CLN3-213ENST00000565047 ATXN2LQ8WWM7 1075 aaKnown RBP16.85■□□□□ 0.29
CLN3-213ENST00000565047 GJA10Q969M2 543 aa16.85■□□□□ 0.29
CLN3-213ENST00000565047 C17orf80Q9BSJ5 609 aa16.85■□□□□ 0.29
CLN3-213ENST00000565047 CELF4Q9BZC1 486 aaKnown RBP16.85■□□□□ 0.29
CLN3-213ENST00000565047 CDHR5Q9HBB8 845 aa16.85■□□□□ 0.29
CLN3-213ENST00000565047 GJB4Q9NTQ9 266 aa16.85■□□□□ 0.29
CLN3-213ENST00000565047 KCNJ14Q9UNX9 436 aa16.85■□□□□ 0.29
CLN3-213ENST00000565047 TRPV2Q9Y5S1 764 aa16.85■□□□□ 0.29
CLN3-213ENST00000565047 LARGE1O95461 756 aa16.84■□□□□ 0.29
CLN3-213ENST00000565047 TDP2O95551 362 aa16.84■□□□□ 0.29
CLN3-213ENST00000565047 C22orf31O95567 290 aa16.84■□□□□ 0.29
CLN3-213ENST00000565047 CD52P31358 61 aa16.84■□□□□ 0.29
CLN3-213ENST00000565047 TMEM62Q0P6H9 643 aa16.84■□□□□ 0.29
CLN3-213ENST00000565047 ME3Q16798 604 aa16.84■□□□□ 0.29
CLN3-213ENST00000565047 CPLX2Q6PUV4 134 aaKnown RBP16.84■□□□□ 0.29
CLN3-213ENST00000565047 MOXD1Q6UVY6 613 aa16.84■□□□□ 0.29
CLN3-213ENST00000565047 LINC01465Q8N7H1 131 aa16.84■□□□□ 0.29
CLN3-213ENST00000565047 ETNPPLQ8TBG4 499 aa16.84■□□□□ 0.29
CLN3-213ENST00000565047 BBXQ8WY36 941 aaPredicted RBP16.84■□□□□ 0.29
CLN3-213ENST00000565047 ZNF689Q96CS4 500 aaPredicted RBP16.84■□□□□ 0.29
CLN3-213ENST00000565047 C22orf23Q9BZE7 217 aa16.84■□□□□ 0.29
CLN3-213ENST00000565047 SLKQ9H2G2 1235 aaPredicted RBP16.84■□□□□ 0.29
CLN3-213ENST00000565047 TMX1Q9H3N1 280 aa16.84■□□□□ 0.29
CLN3-213ENST00000565047 LMCD1Q9NZU5 365 aa16.84■□□□□ 0.29
CLN3-213ENST00000565047 STBD1O95210 358 aa16.83■□□□□ 0.28
CLN3-213ENST00000565047 PSAPP07602 524 aa16.83■□□□□ 0.28
CLN3-213ENST00000565047 GDPD5Q8WTR4 605 aa16.83■□□□□ 0.28
CLN3-213ENST00000565047 TMEM40Q8WWA1 233 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms