RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 COL4A6Q14031 1691 aa12.3□□□□□ -0.44
VPS39-208ENST00000564994 POTEB3A0JP26 581 aa12.3□□□□□ -0.44
VPS39-208ENST00000564994 GTPBP6O43824 516 aaPredicted RBP12.3□□□□□ -0.44
VPS39-208ENST00000564994 UPP2O95045 317 aa12.3□□□□□ -0.44
VPS39-208ENST00000564994 MRPS6P82932 125 aaKnown RBP12.3□□□□□ -0.44
VPS39-208ENST00000564994 TMEM62Q0P6H9 643 aa12.3□□□□□ -0.44
VPS39-208ENST00000564994 STK3Q13188 491 aa12.3□□□□□ -0.44
VPS39-208ENST00000564994 PRR16Q569H4 304 aa12.3□□□□□ -0.44
VPS39-208ENST00000564994 FBXO47Q5MNV8 452 aa12.3□□□□□ -0.44
VPS39-208ENST00000564994 POTEBQ6S5H4 581 aa12.3□□□□□ -0.44
VPS39-208ENST00000564994 RSPH3Q86UC2 560 aa12.3□□□□□ -0.44
VPS39-208ENST00000564994 CCDC148Q8NFR7 591 aa12.3□□□□□ -0.44
VPS39-208ENST00000564994 BICD2Q8TD16 824 aa12.3□□□□□ -0.44
VPS39-208ENST00000564994 ATXN2LQ8WWM7 1075 aaKnown RBP12.3□□□□□ -0.44
VPS39-208ENST00000564994 AIFM3Q96NN9 605 aa12.3□□□□□ -0.44
VPS39-208ENST00000564994 TGS1Q96RS0 853 aaKnown RBP12.3□□□□□ -0.44
VPS39-208ENST00000564994 C17orf80Q9BSJ5 609 aa12.3□□□□□ -0.44
VPS39-208ENST00000564994 ZNF577Q9BSK1 485 aa12.3□□□□□ -0.44
VPS39-208ENST00000564994 AGO3Q9H9G7 860 aaKnown RBP12.3□□□□□ -0.44
VPS39-208ENST00000564994 SH3GLB2Q9NR46 395 aa12.3□□□□□ -0.44
VPS39-208ENST00000564994 PDRG1Q9NUG6 133 aa12.3□□□□□ -0.44
VPS39-208ENST00000564994 PCDHA2Q9Y5H9 948 aa12.3□□□□□ -0.44
VPS39-208ENST00000564994 ZBTB42B2RXF5 422 aa12.29□□□□□ -0.44
VPS39-208ENST00000564994 M0R2N6 131 aa12.29□□□□□ -0.44
VPS39-208ENST00000564994 BACH1O14867 736 aa12.29□□□□□ -0.44
VPS39-208ENST00000564994 SLC26A2P50443 739 aa12.29□□□□□ -0.44
VPS39-208ENST00000564994 NLRP5P59047 1200 aa12.29□□□□□ -0.44
VPS39-208ENST00000564994 SETQ01105 290 aaPredicted RBP12.29□□□□□ -0.44
VPS39-208ENST00000564994 SSRP1Q08945 709 aaKnown RBP12.29□□□□□ -0.44
VPS39-208ENST00000564994 NPY5RQ15761 445 aa12.29□□□□□ -0.44
VPS39-208ENST00000564994 SWSAP1Q6NVH7 229 aa12.29□□□□□ -0.44
VPS39-208ENST00000564994 MTHFD1LQ6UB35 978 aa12.29□□□□□ -0.44
VPS39-208ENST00000564994 ATP8B4Q8TF62 1192 aa12.29□□□□□ -0.44
VPS39-208ENST00000564994 LINC01599Q8WXQ3 324 aa12.29□□□□□ -0.44
VPS39-208ENST00000564994 ASB2Q96Q27 587 aa12.29□□□□□ -0.44
VPS39-208ENST00000564994 ZNF302Q9NR11 478 aa12.29□□□□□ -0.44
VPS39-208ENST00000564994 TBC1D22BQ9NU19 505 aa12.29□□□□□ -0.44
VPS39-208ENST00000564994 KIAA1671Q9BY89 1806 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 SMIM35A0A1B0GVV1 85 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 ENPP3O14638 875 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 HBP1O60381 514 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 DTNBO60941 627 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 DEXIO95424 95 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 KLRC1P26715 233 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 CD52P31358 61 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 MRPS5P82675 430 aaKnown RBP12.28□□□□□ -0.44
VPS39-208ENST00000564994 TFF2Q03403 129 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 SCRN1Q12765 414 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 IER5Q5VY09 327 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 ERICH6BQ5W0A0 696 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 FAM160B1Q5W0V3 765 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 ZNF746Q6NUN9 644 aaPredicted RBP12.28□□□□□ -0.44
VPS39-208ENST00000564994 MIS18BP1Q6P0N0 1132 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 PDXDC2PQ6P474 469 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 TSHZ1Q6ZSZ6 1077 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 TRIM22Q8IYM9 498 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 SYMPKQ92797 1274 aaKnown RBP12.28□□□□□ -0.44
VPS39-208ENST00000564994 TNPO1Q92973 898 aaKnown RBP12.28□□□□□ -0.44
VPS39-208ENST00000564994 YME1L1Q96TA2 773 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 PCDHA4Q9UN74 947 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 MAFBQ9Y5Q3 323 aaPredicted RBP12.28□□□□□ -0.44
VPS39-208ENST00000564994 TRPV2Q9Y5S1 764 aa12.28□□□□□ -0.44
VPS39-208ENST00000564994 CPLX1O14810 134 aa12.27□□□□□ -0.45
VPS39-208ENST00000564994 MSH4O15457 936 aa12.27□□□□□ -0.45
VPS39-208ENST00000564994 RPLP2P05387 115 aaKnown RBP12.27□□□□□ -0.45
VPS39-208ENST00000564994 USP11P51784 963 aa12.27□□□□□ -0.45
VPS39-208ENST00000564994 KRT76Q01546 638 aa12.27□□□□□ -0.45
VPS39-208ENST00000564994 SKIV2LQ15477 1246 aaKnown RBP12.27□□□□□ -0.45
VPS39-208ENST00000564994 RTN4RL1Q86UN2 441 aaPredicted RBP12.27□□□□□ -0.45
VPS39-208ENST00000564994 FBXO22Q8NEZ5 403 aa12.27□□□□□ -0.45
VPS39-208ENST00000564994 TBCKQ8TEA7 893 aa12.27□□□□□ -0.45
VPS39-208ENST00000564994 GJA10Q969M2 543 aa12.27□□□□□ -0.45
VPS39-208ENST00000564994 CELF4Q9BZC1 486 aaKnown RBP12.27□□□□□ -0.45
VPS39-208ENST00000564994 RC3H2Q9HBD1 1191 aaKnown RBP12.27□□□□□ -0.45
VPS39-208ENST00000564994 LMCD1Q9NZU5 365 aa12.27□□□□□ -0.45
VPS39-208ENST00000564994 TPCN1Q9ULQ1 816 aa12.27□□□□□ -0.45
VPS39-208ENST00000564994 PCDHA10Q9Y5I2 948 aa12.27□□□□□ -0.45
VPS39-208ENST00000564994 IGSF9BQ9UPX0 1349 aa12.27□□□□□ -0.45
VPS39-208ENST00000564994 COL1A2P08123 1366 aa12.27□□□□□ -0.45
VPS39-208ENST00000564994 TDP2O95551 362 aa12.26□□□□□ -0.45
VPS39-208ENST00000564994 C22orf31O95567 290 aa12.26□□□□□ -0.45
VPS39-208ENST00000564994 LINC00271P0C7V0 271 aa12.26□□□□□ -0.45
VPS39-208ENST00000564994 EPC2Q52LR7 807 aa12.26□□□□□ -0.45
VPS39-208ENST00000564994 ZNF484Q5JVG2 852 aa12.26□□□□□ -0.45
VPS39-208ENST00000564994 TRMT1LQ7Z2T5 733 aaKnown RBP12.26□□□□□ -0.45
VPS39-208ENST00000564994 SMAP1Q8IYB5 467 aaPredicted RBP12.26□□□□□ -0.45
VPS39-208ENST00000564994 KIAA0319LQ8IZA0 1049 aa12.26□□□□□ -0.45
VPS39-208ENST00000564994 BLIDQ8IZY5 108 aa12.26□□□□□ -0.45
VPS39-208ENST00000564994 NME8Q8N427 588 aa12.26□□□□□ -0.45
VPS39-208ENST00000564994 DAGLBQ8NCG7 672 aa12.26□□□□□ -0.45
VPS39-208ENST00000564994 BBXQ8WY36 941 aaPredicted RBP12.26□□□□□ -0.45
VPS39-208ENST00000564994 SLC5A5Q92911 643 aa12.26□□□□□ -0.45
VPS39-208ENST00000564994 TSPYL2Q9H2G4 693 aaPredicted RBP12.26□□□□□ -0.45
VPS39-208ENST00000564994 CDHR5Q9HBB8 845 aa12.26□□□□□ -0.45
VPS39-208ENST00000564994 GJB4Q9NTQ9 266 aa12.26□□□□□ -0.45
VPS39-208ENST00000564994 GABBR1Q9UBS5 961 aa12.26□□□□□ -0.45
VPS39-208ENST00000564994 PADI3Q9ULW8 664 aa12.26□□□□□ -0.45
VPS39-208ENST00000564994 KCNJ14Q9UNX9 436 aa12.26□□□□□ -0.45
VPS39-208ENST00000564994 SQORQ9Y6N5 450 aa12.26□□□□□ -0.45
VPS39-208ENST00000564994 KDM3AQ9Y4C1 1321 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms