RNA–Protein interactions for RNA: ENST00000564288.5

MACF1-231, Transcript of microtubule-actin crosslinking factor 1, human

APPRIS ALT2 TSL 5 BASIC

Gene MACF1, Length 24,828 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MACF1-231	ENST00000564288	TSPAN9	O75954	239 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	CWF19L2	Q2TBE0	894 aa	Known RBP	4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	SCAI	Q8N9R8	606 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	PTPRK	Q15262	1439 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	NLRP1	Q9C000	1473 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	ASIC1	P78348	528 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	CRLF3	Q8IUI8	442 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	LRRC43	Q8N309	656 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	DNM3	Q9UQ16	869 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288		A0A1W2PQJ5	194 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	SMARCA1	P28370	1054 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	SARS	P49591	514 aa	Known RBP	4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	WTAP	Q15007	396 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	FIGN	Q5HY92	759 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	C1orf228	Q6PIY5	440 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	NUDCD3	Q8IVD9	361 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	CHAMP1	Q96JM3	812 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	4.57	□□□□□ -1.68	1e-6	■■□□□ 12.6
MACF1-231	ENST00000564288	NRXN1	Q9ULB1	1477 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	ZC3H18	Q86VM9	953 aa	Known RBP	4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	SRRM1	Q8IYB3	904 aa	Known RBP	4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	SEPT10	Q9P0V9	454 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	PITPNM2	Q9BZ72	1349 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	DISP3	Q9P2K9	1392 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	VIRMA	Q69YN4	1812 aa	Known RBP	4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	TBKBP1	A7MCY6	615 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	BNC1	Q01954	994 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	CALML6	Q8TD86	181 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	POLR3C	Q9BUI4	534 aa	Predicted RBP	4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	NDST4	Q9H3R1	872 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	GPC4	O75487	556 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	LDHC	P07864	332 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	AKNAD1	Q5T1N1	836 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	SNX30	Q5VWJ9	437 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	ZC3H11A	O75152	810 aa	Known RBP eCLIP	4.57	□□□□□ -1.68	5e-16	■■■□□ 16.9
MACF1-231	ENST00000564288	ST13	P50502	369 aa	Known RBP	4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	PHEX	P78562	749 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	NEK10	Q6ZWH5	1172 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	PNKP	Q96T60	521 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	CRNKL1	Q9BZJ0	848 aa	Known RBP	4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	SRGN	P10124	158 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	C4BPB	P20851	252 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	PDE4B	Q07343	736 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	SLC9C2	Q5TAH2	1124 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	ATP8B3	O60423	1300 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	SRGAP2	O75044	1071 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	POLD1	P28340	1107 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	HSP90AA4P	Q58FG1	418 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	SEL1L2	Q5TEA6	688 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	ARL8A	Q96BM9	186 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	RARG	P13631	454 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	CHRNA3	P32297	505 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	ADAM9	Q13443	819 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	TMPRSS6	Q8IU80	811 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	CCDC82	Q8N4S0	544 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	SCFD1	Q8WVM8	642 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288		F8W8V4	182 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288		H3BQF6	201 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	WDR46	O15213	610 aa	Known RBP	4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	CASP10	Q92851	521 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	GDF3	Q9NR23	364 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	OAT	P04181	439 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	PDE4D	Q08499	809 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	POLA2	Q14181	598 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	DYDC2	Q96IM9	177 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	TBC1D7	Q9P0N9	293 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	TRPM1	Q7Z4N2	1603 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288		A6NHS1	94 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	IGF2BP3	O00425	579 aa	Known RBP eCLIP	4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	VCL	P18206	1134 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	POTEA	Q6S8J7	498 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	ANKRD23	Q86SG2	305 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	MKNK2	Q9HBH9	465 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	TXNDC16	Q9P2K2	825 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	ANKFY1	Q9P2R3	1169 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	TMEM247	A6NEH6	219 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	PDE5A	O76074	875 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	MCM7	P33993	719 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	DNAJB4	Q9UDY4	337 aa		4.57	□□□□□ -1.68
MACF1-231	ENST00000564288	DKC1	O60832	514 aa	Known RBP eCLIP	4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	TTC4	O95801	387 aa		4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	FGA	P02671	866 aa		4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	RPL26	P61254	145 aa	Known RBP	4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	GSTO1	P78417	241 aa		4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	GRM1	Q13255	1194 aa		4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	ACTRT1	Q8TDG2	376 aa		4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	MOV10	Q9HCE1	1003 aa	Known RBP	4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	VPS45	Q9NRW7	570 aa		4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	RSPH10B2	B2RC85	870 aa		4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	RSPH10B	P0C881	870 aa		4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	LIFR	P42702	1097 aa		4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	NPEPPS	P55786	919 aa		4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	GPC5	P78333	572 aa		4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	USPL1	Q5W0Q7	1092 aa		4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	PCNX4	Q63HM2	1172 aa		4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	TRIM11	Q96F44	468 aa		4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	TLR7	Q9NYK1	1049 aa	Known RBP	4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	ZMYM6	O95789	1325 aa		4.56	□□□□□ -1.68
MACF1-231	ENST00000564288	OLFML3	Q9NRN5	406 aa		4.56	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms