RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 NBPF9Q3BBW0 867 aa6.79□□□□□ -1.32
VPS35-204ENST00000563884 NBPF12Q5TAG4 269 aaPredicted RBP6.79□□□□□ -1.32
VPS35-204ENST00000563884 OVOS1Q6IE37 1185 aa6.79□□□□□ -1.32
VPS35-204ENST00000563884 Q7L0L9 218 aa6.79□□□□□ -1.32
VPS35-204ENST00000563884 TTC5Q8N0Z6 440 aa6.79□□□□□ -1.32
VPS35-204ENST00000563884 NYXQ9GZU5 481 aa6.79□□□□□ -1.32
VPS35-204ENST00000563884 SLC52A2Q9HAB3 445 aa6.79□□□□□ -1.32
VPS35-204ENST00000563884 PARD6AQ9NPB6 346 aa6.79□□□□□ -1.32
VPS35-204ENST00000563884 SIRT5Q9NXA8 310 aa6.79□□□□□ -1.32
VPS35-204ENST00000563884 GGA3Q9NZ52 723 aa6.79□□□□□ -1.32
VPS35-204ENST00000563884 PCDHGB7Q9Y5F8 929 aa6.79□□□□□ -1.32
VPS35-204ENST00000563884 LRRC37AA6NMS7 1700 aa6.79□□□□□ -1.32
VPS35-204ENST00000563884 PRUNE2Q8WUY3 3088 aa6.78□□□□□ -1.32
VPS35-204ENST00000563884 LAMB2P55268 1798 aa6.78□□□□□ -1.32
VPS35-204ENST00000563884 TNFRSF10CO14798 259 aa6.78□□□□□ -1.32
VPS35-204ENST00000563884 CAMTA2O94983 1202 aa6.78□□□□□ -1.32
VPS35-204ENST00000563884 EFEMP2O95967 443 aa6.78□□□□□ -1.32
VPS35-204ENST00000563884 POLR2BP30876 1174 aaKnown RBP6.78□□□□□ -1.32
VPS35-204ENST00000563884 SNW1Q13573 536 aaKnown RBP6.78□□□□□ -1.32
VPS35-204ENST00000563884 SSPNQ14714 243 aa6.78□□□□□ -1.32
VPS35-204ENST00000563884 CRY2Q49AN0 593 aa6.78□□□□□ -1.32
VPS35-204ENST00000563884 TBC1D10BQ4KMP7 808 aaPredicted RBP6.78□□□□□ -1.32
VPS35-204ENST00000563884 FAM109BQ6ICB4 259 aaPredicted RBP6.78□□□□□ -1.32
VPS35-204ENST00000563884 ZPBP2Q6X784 338 aa6.78□□□□□ -1.32
VPS35-204ENST00000563884 GK5Q6ZS86 529 aa6.78□□□□□ -1.32
VPS35-204ENST00000563884 CD99L2Q8TCZ2 262 aa6.78□□□□□ -1.32
VPS35-204ENST00000563884 CRTAC1Q9NQ79 661 aa6.78□□□□□ -1.32
VPS35-204ENST00000563884 ECM29Q5VYK3 1845 aa6.78□□□□□ -1.32
VPS35-204ENST00000563884 IRS2Q9Y4H2 1338 aa6.77□□□□□ -1.32
VPS35-204ENST00000563884 CLEC3AO75596 197 aa6.77□□□□□ -1.33
VPS35-204ENST00000563884 RAD17O75943 681 aa6.77□□□□□ -1.33
VPS35-204ENST00000563884 PRAMEF1O95521 474 aa6.77□□□□□ -1.33
VPS35-204ENST00000563884 NME1P15531 152 aaKnown RBP6.77□□□□□ -1.33
VPS35-204ENST00000563884 SDHBP21912 280 aa6.77□□□□□ -1.33
VPS35-204ENST00000563884 MCM4P33991 863 aa6.77□□□□□ -1.33
VPS35-204ENST00000563884 BUD31P41223 144 aaPredicted RBP6.77□□□□□ -1.33
VPS35-204ENST00000563884 HDLBPQ00341 1268 aaKnown RBP6.77□□□□□ -1.33
VPS35-204ENST00000563884 SP3Q02447 781 aa6.77□□□□□ -1.33
VPS35-204ENST00000563884 RAD51AP2Q09MP3 1159 aa6.77□□□□□ -1.33
VPS35-204ENST00000563884 KIAA2012Q0VF49 1180 aa6.77□□□□□ -1.33
VPS35-204ENST00000563884 NLRC3Q7RTR2 1065 aa6.77□□□□□ -1.33
VPS35-204ENST00000563884 TMEM151BQ8IW70 566 aa6.77□□□□□ -1.33
VPS35-204ENST00000563884 ZNF654Q8IZM8 581 aa6.77□□□□□ -1.33
VPS35-204ENST00000563884 RBM17Q96I25 401 aaKnown RBP6.77□□□□□ -1.33
VPS35-204ENST00000563884 ZNF512BQ96KM6 892 aaPredicted RBP6.77□□□□□ -1.33
VPS35-204ENST00000563884 C20orf173Q96LM9 149 aa6.77□□□□□ -1.33
VPS35-204ENST00000563884 ANTXR1Q9H6X2 564 aa6.77□□□□□ -1.33
VPS35-204ENST00000563884 IRAK3Q9Y616 596 aa6.77□□□□□ -1.33
VPS35-204ENST00000563884 TMEM82A0PJX8 343 aa6.76□□□□□ -1.33
VPS35-204ENST00000563884 PRAMEF22A3QJZ6 481 aa6.76□□□□□ -1.33
VPS35-204ENST00000563884 IMPDH2P12268 514 aa6.76□□□□□ -1.33
VPS35-204ENST00000563884 PI3P19957 117 aa6.76□□□□□ -1.33
VPS35-204ENST00000563884 PRMT2P55345 433 aa6.76□□□□□ -1.33
VPS35-204ENST00000563884 RTP1P59025 263 aa6.76□□□□□ -1.33
VPS35-204ENST00000563884 BBS9Q3SYG4 887 aa6.76□□□□□ -1.33
VPS35-204ENST00000563884 DPP8Q6V1X1 898 aaPredicted RBP6.76□□□□□ -1.33
VPS35-204ENST00000563884 ARMC9Q7Z3E5 817 aa6.76□□□□□ -1.33
VPS35-204ENST00000563884 TDHQ8IZJ6 230 aa6.76□□□□□ -1.33
VPS35-204ENST00000563884 RBBP8NLQ8NC74 664 aaPredicted RBP6.76□□□□□ -1.33
VPS35-204ENST00000563884 RELTQ969Z4 430 aa6.76□□□□□ -1.33
VPS35-204ENST00000563884 SIGLEC10Q96LC7 697 aa6.76□□□□□ -1.33
VPS35-204ENST00000563884 CRAMP1Q96RY5 1269 aa6.76□□□□□ -1.33
VPS35-204ENST00000563884 RTFDC1Q9BY42 306 aaPredicted RBP6.76□□□□□ -1.33
VPS35-204ENST00000563884 PRDM14Q9GZV8 571 aa6.76□□□□□ -1.33
VPS35-204ENST00000563884 STAP2Q9UGK3 403 aa6.76□□□□□ -1.33
VPS35-204ENST00000563884 MBD1Q9UIS9 605 aaPredicted RBP6.76□□□□□ -1.33
VPS35-204ENST00000563884 NIP7Q9Y221 180 aaKnown RBP eCLIP6.76□□□□□ -1.33
VPS35-204ENST00000563884 PTCH2Q9Y6C5 1203 aa6.76□□□□□ -1.33
VPS35-204ENST00000563884 IBTKQ9P2D0 1353 aaPredicted RBP6.76□□□□□ -1.33
VPS35-204ENST00000563884 SSC5DA1L4H1 1573 aa6.76□□□□□ -1.33
VPS35-204ENST00000563884 MGAMO43451 1857 aa6.75□□□□□ -1.33
VPS35-204ENST00000563884 MUC6Q6W4X9 2439 aa6.75□□□□□ -1.33
VPS35-204ENST00000563884 WTIPA6NIX2 430 aaPredicted RBP6.75□□□□□ -1.33
VPS35-204ENST00000563884 HRKO00198 91 aa6.75□□□□□ -1.33
VPS35-204ENST00000563884 SIGLEC6O43699 453 aa6.75□□□□□ -1.33
VPS35-204ENST00000563884 WDHD1O75717 1129 aaPredicted RBP6.75□□□□□ -1.33
VPS35-204ENST00000563884 ZBTB48P10074 688 aaPredicted RBP6.75□□□□□ -1.33
VPS35-204ENST00000563884 PNLIPP16233 465 aa6.75□□□□□ -1.33
VPS35-204ENST00000563884 KIF22Q14807 665 aa6.75□□□□□ -1.33
VPS35-204ENST00000563884 DLK2Q6UY11 383 aa6.75□□□□□ -1.33
VPS35-204ENST00000563884 TAB3Q8N5C8 712 aaPredicted RBP6.75□□□□□ -1.33
VPS35-204ENST00000563884 MAFAQ8NHW3 353 aaPredicted RBP6.75□□□□□ -1.33
VPS35-204ENST00000563884 RASGRP4Q8TDF6 673 aa6.75□□□□□ -1.33
VPS35-204ENST00000563884 ZNF496Q96IT1 587 aaPredicted RBP6.75□□□□□ -1.33
VPS35-204ENST00000563884 C1QTNF1Q9BXJ1 281 aa6.75□□□□□ -1.33
VPS35-204ENST00000563884 KRTAP4-11Q9BYQ6 195 aa6.75□□□□□ -1.33
VPS35-204ENST00000563884 MKRN2Q9H000 416 aaKnown RBP6.75□□□□□ -1.33
VPS35-204ENST00000563884 R3HDMLQ9H3Y0 253 aa6.75□□□□□ -1.33
VPS35-204ENST00000563884 CHST7Q9NS84 486 aa6.75□□□□□ -1.33
VPS35-204ENST00000563884 MINPP1Q9UNW1 487 aa6.75□□□□□ -1.33
VPS35-204ENST00000563884 MUC3AQ02505 3323 aa6.75□□□□□ -1.33
VPS35-204ENST00000563884 HEG1Q9ULI3 1381 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 UBE2Q2LH0YL09 131 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 MEIS1O00470 390 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 VIPR1P32241 457 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 GJA8P48165 433 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 EPHB3P54753 998 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 SLC39A6Q13433 755 aa6.74□□□□□ -1.33
VPS35-204ENST00000563884 COL9A2Q14055 689 aaPredicted RBP6.74□□□□□ -1.33
VPS35-204ENST00000563884 EIF4A2Q14240 407 aaKnown RBP6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms