RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 PRDM5Q9NQX1 630 aaPredicted RBP9.95□□□□□ -0.82
VPS39-207ENST00000563692 FANCLQ9NW38 375 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 ADD3Q9UEY8 706 aaKnown RBP9.95□□□□□ -0.82
VPS39-207ENST00000563692 RWDD2AQ9UIY3 292 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 PHF24Q9UPV7 400 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 PARP14Q460N5 1801 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 COL11A1P12107 1806 aaPredicted RBP9.94□□□□□ -0.82
VPS39-207ENST00000563692 MOXD2PA6NHM9 499 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 B4DLN1 442 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 PSMA7O14818 248 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 C6orf222P0C671 652 aaPredicted RBP9.94□□□□□ -0.82
VPS39-207ENST00000563692 UBASH3AP57075 661 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 FANCCQ00597 558 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 CNTN2Q02246 1040 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 PDE4DQ08499 809 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 PPP2R5CQ13362 524 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 BAATQ14032 418 aaPredicted RBP9.94□□□□□ -0.82
VPS39-207ENST00000563692 MCM6Q14566 821 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 CCDC144BQ3MJ40 725 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 KLHL10Q6JEL2 608 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 SLC39A5Q6ZMH5 540 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 UNC13DQ70J99 1090 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 ZSCAN30Q86W11 494 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 CATSPER3Q86XQ3 398 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 PCSK9Q8NBP7 692 aaKnown RBP9.94□□□□□ -0.82
VPS39-207ENST00000563692 GIMAP8Q8ND71 665 aaPredicted RBP9.94□□□□□ -0.82
VPS39-207ENST00000563692 CYP2W1Q8TAV3 490 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 NSUN6Q8TEA1 469 aaKnown RBP9.94□□□□□ -0.82
VPS39-207ENST00000563692 VTI1AQ96AJ9 217 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 DHTKD1Q96HY7 919 aaPredicted RBP9.94□□□□□ -0.82
VPS39-207ENST00000563692 TAAR1Q96RJ0 339 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 CTAGE1Q96RT6 745 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 GDF15Q99988 308 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 TSEN34Q9BSV6 310 aaKnown RBP9.94□□□□□ -0.82
VPS39-207ENST00000563692 PRO3102Q9H379 93 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 TUFT1Q9NNX1 390 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 JADE2Q9NQC1 790 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 TBC1D22BQ9NU19 505 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 BLOC1S4Q9NUP1 217 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 CYP39A1Q9NYL5 469 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 PCDH10Q9P2E7 1040 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 IMPACTQ9P2X3 320 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 TCEAL9Q9UHQ7 104 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 NFE2L3Q9Y4A8 694 aa9.94□□□□□ -0.82
VPS39-207ENST00000563692 SYNRGQ9UMZ2 1314 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 BICDL2A1A5D9 508 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 ESPNB1AK53 854 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 IPO5O00410 1097 aaKnown RBP9.93□□□□□ -0.82
VPS39-207ENST00000563692 KLRC4O43908 158 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 ZEB2O60315 1214 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 PSMD10O75832 226 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 STAM2O75886 525 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 KIF20AO95235 890 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 SSBP05455 408 aaKnown RBP eCLIP9.93□□□□□ -0.82
VPS39-207ENST00000563692 KRT18P05783 430 aaKnown RBP9.93□□□□□ -0.82
VPS39-207ENST00000563692 PLA2G4BP0C869 781 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 MYCLP12524 364 aaPredicted RBP9.93□□□□□ -0.82
VPS39-207ENST00000563692 EIF2AK2P19525 551 aaKnown RBP9.93□□□□□ -0.82
VPS39-207ENST00000563692 CCND2P30279 289 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 SPAG1Q07617 926 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 PAK1Q13153 545 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 PGM5Q15124 567 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 EPHA7Q15375 998 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 TRIM60Q495X7 471 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 FILIP1LQ4L180 1135 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 CCDC65Q8IXS2 484 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 TDHQ8IZJ6 230 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 ADSSL1Q8N142 457 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 SPC24Q8NBT2 197 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 NEK9Q8TD19 979 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 NOC3LQ8WTT2 800 aaKnown RBP9.93□□□□□ -0.82
VPS39-207ENST00000563692 NELFBQ8WX92 580 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 GJA10Q969M2 543 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 LENG1Q96BZ8 264 aaPredicted RBP9.93□□□□□ -0.82
VPS39-207ENST00000563692 CDHR1Q96JP9 859 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 GLT1D1Q96MS3 346 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 NACC1Q96RE7 527 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 EIF2AK1Q9BQI3 630 aaKnown RBP9.93□□□□□ -0.82
VPS39-207ENST00000563692 STARD7Q9NQZ5 370 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 PXMP2Q9NR77 195 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 IFNKQ9P0W0 207 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 VAV3Q9UKW4 847 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 UBIAD1Q9Y5Z9 338 aa9.93□□□□□ -0.82
VPS39-207ENST00000563692 FRMPD4Q14CM0 1322 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 LOC102724159A0A0B4J2E5 919 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 A0A1W2PQ45 241 aaPredicted RBP9.92□□□□□ -0.82
VPS39-207ENST00000563692 A0A1W2PQY0 241 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 SOWAHBA6NEL2 793 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 MYMKA6NI61 221 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 E9PMD0 336 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 PQBP1O60828 265 aaKnown RBP9.92□□□□□ -0.82
VPS39-207ENST00000563692 ADAMTS4O75173 837 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 MED24O75448 989 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 FGFR1OPO95684 399 aaKnown RBP9.92□□□□□ -0.82
VPS39-207ENST00000563692 ARP10275 920 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 IDEP14735 1019 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 ITGB5P18084 799 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 CST5P28325 142 aaPredicted RBP9.92□□□□□ -0.82
VPS39-207ENST00000563692 PRCPP42785 496 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 TNFAIP2Q03169 654 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms