RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 SGPP1Q9BX95 441 aa8.27□□□□□ -1.09
RTF1-204ENST00000558117 FBLN5Q9UBX5 448 aa8.27□□□□□ -1.09
RTF1-204ENST00000558117 MBD1Q9UIS9 605 aaPredicted RBP8.27□□□□□ -1.09
RTF1-204ENST00000558117 NUDT5Q9UKK9 219 aa8.27□□□□□ -1.09
RTF1-204ENST00000558117 IFT172Q9UG01 1749 aa8.26□□□□□ -1.09
RTF1-204ENST00000558117 BLACEA4D250 179 aa8.26□□□□□ -1.09
RTF1-204ENST00000558117 FUCA1P04066 466 aa8.26□□□□□ -1.09
RTF1-204ENST00000558117 RPL11P62913 178 aaKnown RBP8.26□□□□□ -1.09
RTF1-204ENST00000558117 NTRK3Q16288 839 aa8.26□□□□□ -1.09
RTF1-204ENST00000558117 ACBD5Q5T8D3 534 aaPredicted RBP8.26□□□□□ -1.09
RTF1-204ENST00000558117 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.26□□□□□ -1.09
RTF1-204ENST00000558117 MARCH2Q9P0N8 246 aa8.26□□□□□ -1.09
RTF1-204ENST00000558117 TNRC6CQ9HCJ0 1690 aaKnown RBP8.26□□□□□ -1.09
RTF1-204ENST00000558117 AKAP12Q02952 1782 aa8.25□□□□□ -1.09
RTF1-204ENST00000558117 KRTAP9-6A0A140TA67 174 aa8.25□□□□□ -1.09
RTF1-204ENST00000558117 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.25□□□□□ -1.09
RTF1-204ENST00000558117 F8W031 263 aaPredicted RBP8.25□□□□□ -1.09
RTF1-204ENST00000558117 EXOC5O00471 708 aa8.25□□□□□ -1.09
RTF1-204ENST00000558117 VEGFAP15692 232 aaPredicted RBP8.25□□□□□ -1.09
RTF1-204ENST00000558117 FXR1P51114 621 aaKnown RBP eCLIP8.25□□□□□ -1.09
RTF1-204ENST00000558117 GTF2A2P52657 109 aa8.25□□□□□ -1.09
RTF1-204ENST00000558117 NFE2L2Q16236 605 aa8.25□□□□□ -1.09
RTF1-204ENST00000558117 KCNA10Q16322 511 aa8.25□□□□□ -1.09
RTF1-204ENST00000558117 FAM209AQ5JX71 171 aa8.25□□□□□ -1.09
RTF1-204ENST00000558117 NETO2Q8NC67 525 aa8.25□□□□□ -1.09
RTF1-204ENST00000558117 RCBTB1Q8NDN9 531 aa8.25□□□□□ -1.09
RTF1-204ENST00000558117 MTA3Q9BTC8 594 aa8.25□□□□□ -1.09
RTF1-204ENST00000558117 CD320Q9NPF0 282 aa8.25□□□□□ -1.09
RTF1-204ENST00000558117 SMG5Q9UPR3 1016 aaKnown RBP8.25□□□□□ -1.09
RTF1-204ENST00000558117 ZC3H12DA2A288 527 aaKnown RBP8.24□□□□□ -1.09
RTF1-204ENST00000558117 NPIPB6E9PJ23 425 aa8.24□□□□□ -1.09
RTF1-204ENST00000558117 GLI4P10075 376 aa8.24□□□□□ -1.09
RTF1-204ENST00000558117 LTBRP36941 435 aa8.24□□□□□ -1.09
RTF1-204ENST00000558117 TESK1Q15569 626 aa8.24□□□□□ -1.09
RTF1-204ENST00000558117 WWC2Q6AWC2 1192 aa8.24□□□□□ -1.09
RTF1-204ENST00000558117 TOM1L2Q6ZVM7 507 aa8.24□□□□□ -1.09
RTF1-204ENST00000558117 USP53Q70EK8 1073 aa8.24□□□□□ -1.09
RTF1-204ENST00000558117 KRTAP19-1Q8IUB9 90 aa8.24□□□□□ -1.09
RTF1-204ENST00000558117 EXOC2Q96KP1 924 aa8.24□□□□□ -1.09
RTF1-204ENST00000558117 CNTD2Q9H8S5 307 aa8.24□□□□□ -1.09
RTF1-204ENST00000558117 CNOT6Q9ULM6 557 aaKnown RBP8.24□□□□□ -1.09
RTF1-204ENST00000558117 TIMM13Q9Y5L4 95 aaPredicted RBP8.24□□□□□ -1.09
RTF1-204ENST00000558117 NPFFR2Q9Y5X5 522 aa8.24□□□□□ -1.09
RTF1-204ENST00000558117 RPGRIP1LQ68CZ1 1315 aa8.24□□□□□ -1.09
RTF1-204ENST00000558117 SZT2Q5T011 3432 aa8.23□□□□□ -1.09
RTF1-204ENST00000558117 TRPM1Q7Z4N2 1603 aa8.23□□□□□ -1.09
RTF1-204ENST00000558117 RFXAPO00287 272 aa8.23□□□□□ -1.09
RTF1-204ENST00000558117 KRT1P04264 644 aa8.23□□□□□ -1.09
RTF1-204ENST00000558117 ZNF200P98182 395 aaPredicted RBP8.23□□□□□ -1.09
RTF1-204ENST00000558117 MAP2K1Q02750 393 aaPredicted RBP8.23□□□□□ -1.09
RTF1-204ENST00000558117 TEX2Q8IWB9 1127 aa8.23□□□□□ -1.09
RTF1-204ENST00000558117 ZSCAN18Q8TBC5 510 aaPredicted RBP8.23□□□□□ -1.09
RTF1-204ENST00000558117 PEX11GQ96HA9 241 aa8.23□□□□□ -1.09
RTF1-204ENST00000558117 MRFAP1L1Q96HT8 127 aa8.23□□□□□ -1.09
RTF1-204ENST00000558117 CHAMP1Q96JM3 812 aa8.23□□□□□ -1.09
RTF1-204ENST00000558117 CDC6Q99741 560 aa8.23□□□□□ -1.09
RTF1-204ENST00000558117 GCM1Q9NP62 436 aa8.23□□□□□ -1.09
RTF1-204ENST00000558117 FBXL7Q9UJT9 491 aa8.23□□□□□ -1.09
RTF1-204ENST00000558117 IRAK3Q9Y616 596 aa8.23□□□□□ -1.09
RTF1-204ENST00000558117 BTAF1O14981 1849 aa8.23□□□□□ -1.09
RTF1-204ENST00000558117 TRBV23-1A0A0A0MS06 115 aa8.22□□□□□ -1.09
RTF1-204ENST00000558117 N4BP3O15049 544 aa8.22□□□□□ -1.09
RTF1-204ENST00000558117 MSCO60682 206 aa8.22□□□□□ -1.09
RTF1-204ENST00000558117 PFKLP17858 780 aa8.22□□□□□ -1.09
RTF1-204ENST00000558117 CDR1P51861 262 aa8.22□□□□□ -1.09
RTF1-204ENST00000558117 SOX10P56693 466 aa8.22□□□□□ -1.09
RTF1-204ENST00000558117 LINC00310P59036 64 aa8.22□□□□□ -1.09
RTF1-204ENST00000558117 CIAPIN1Q6FI81 312 aa8.22□□□□□ -1.09
RTF1-204ENST00000558117 KCNT2Q6UVM3 1135 aa8.22□□□□□ -1.09
RTF1-204ENST00000558117 DCP2Q8IU60 420 aaKnown RBP8.22□□□□□ -1.09
RTF1-204ENST00000558117 SCUBE1Q8IWY4 988 aa8.22□□□□□ -1.09
RTF1-204ENST00000558117 SLC17A8Q8NDX2 589 aa8.22□□□□□ -1.09
RTF1-204ENST00000558117 NGDNQ8NEJ9 315 aaKnown RBP8.22□□□□□ -1.09
RTF1-204ENST00000558117 MZB1Q8WU39 189 aa8.22□□□□□ -1.09
RTF1-204ENST00000558117 SIGLEC10Q96LC7 697 aa8.22□□□□□ -1.09
RTF1-204ENST00000558117 KANSL2Q9H9L4 492 aa8.22□□□□□ -1.09
RTF1-204ENST00000558117 RXFP1Q9HBX9 757 aa8.22□□□□□ -1.09
RTF1-204ENST00000558117 RNF181Q9P0P0 153 aa8.22□□□□□ -1.09
RTF1-204ENST00000558117 PCDHA2Q9Y5H9 948 aa8.22□□□□□ -1.09
RTF1-204ENST00000558117 KNDC1Q76NI1 1749 aa8.22□□□□□ -1.09
RTF1-204ENST00000558117 VIRMAQ69YN4 1812 aaKnown RBP8.22□□□□□ -1.09
RTF1-204ENST00000558117 PKD1L3Q7Z443 1732 aa8.21□□□□□ -1.09
RTF1-204ENST00000558117 C22orf46C9J442 243 aa8.21□□□□□ -1.1
RTF1-204ENST00000558117 NTRK1P04629 796 aa8.21□□□□□ -1.1
RTF1-204ENST00000558117 BCL6P41182 706 aa8.21□□□□□ -1.1
RTF1-204ENST00000558117 EPHB3P54753 998 aa8.21□□□□□ -1.1
RTF1-204ENST00000558117 PRR5P85299 388 aa8.21□□□□□ -1.1
RTF1-204ENST00000558117 LDHDQ86WU2 507 aa8.21□□□□□ -1.1
RTF1-204ENST00000558117 LRRC56Q8IYG6 542 aaPredicted RBP8.21□□□□□ -1.1
RTF1-204ENST00000558117 PLEKHO2Q8TD55 490 aa8.21□□□□□ -1.1
RTF1-204ENST00000558117 ALG3Q92685 438 aa8.21□□□□□ -1.1
RTF1-204ENST00000558117 TRMT2BQ96GJ1 504 aaKnown RBP8.21□□□□□ -1.1
RTF1-204ENST00000558117 DHRS4Q9BTZ2 278 aa8.21□□□□□ -1.1
RTF1-204ENST00000558117 AP5M1Q9H0R1 490 aa8.21□□□□□ -1.1
RTF1-204ENST00000558117 COA3Q9Y2R0 106 aaPredicted RBP8.21□□□□□ -1.1
RTF1-204ENST00000558117 HCFC2Q9Y5Z7 792 aa8.21□□□□□ -1.1
RTF1-204ENST00000558117 WDR17Q8IZU2 1322 aa8.21□□□□□ -1.1
RTF1-204ENST00000558117 NUP155O75694 1391 aa8.21□□□□□ -1.1
RTF1-204ENST00000558117 YTHDC2Q9H6S0 1430 aaKnown RBP8.2□□□□□ -1.1
RTF1-204ENST00000558117 WNK3Q9BYP7 1800 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms